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| Issue Date | Title | Author(s) |
| 2019-09-23 | Hackflex: low cost Illumina sequencing library construction for high sample counts | Gaio, D; To, J; Liu, M; Monahan, L; Anantanawat, K; Darling, A |
| 2013-01-01 | Indigenous Vibrio cholerae strains from a non-endemic region are pathogenic | Islam, A; Labbate, M; Djordjevic, SP; Alam, M; Darling, A; Melvold, J; Holmes, AJ; Johura, FT; Cravioto, A; Charles, IG; Stokes, HW |
| 2010 | Inference Of Homologous Recombination In Bacteria Using Whole-genome Sequences | Didelot, X; Lawson, D; Darling, A; Falush, D |
| 2009-02-01 | Inferring genomic flux in bacteria | Didelot, X; Darling, A; Falush, D |
| 2013-02-12 | Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence | Rands, CM; Darling, A; Fujita, M; Kong, L; Webster, MT; Clabaut, C; Emes, RD; Heger, A; Meader, S; Hawkins, MB; Eisen, MB; Teiling, C; Affourtit, J; Boese, B; Grant, PR; Grant, BR; Eisen, JA; Abzhanov, A; Ponting, CP |
| 2013-07-15 | Insights into the phylogeny and coding potential of microbial dark matter | Rinke, C; Schwientek, P; Sczyrba, A; Ivanova, NN; Anderson, IJ; Cheng, JF; Darling, A; Malfatti, S; Swan, BK; Gies, EA; Dodsworth, JA; Hedlund, BP; Tsiamis, G; Sievert, SM; Liu, WT; Eisen, JA; Hallam, SJ; Kyrpides, NC; Stepanauskas, R; Rubin, EM; Hugenholtz, P; Woyke, T |
| 2018-03-21 | Local and relaxed clocks, the best of both worlds | Fourment, M; Darling, A |
| 2017-01-01 | A longitudinal study of the diabetic skin and wound microbiome | Gardiner, M; Vicaretti, M; Sparks, J; Bansal, S; Bush, S; Liu, M; Darling, A; Harry, E; Burke, CM |
| 2015-01-01 | Metagenomic Chromosome Conformation Capture (3C): Techniques, applications, and challenges | Darling, A; Liu, M |
| 2016-01-01 | The metagenomics and metadesign of the subways and Urban biomes (MetaSUB) international consortium inaugural meeting report | Afshinnekoo, E; Ahsanuddin, S; Ghedin, E; Read, T; Fraser, C; Dudley, J; Bowler, C; Mason, CE; Chernomoretz, A; Stolovitzky, G; Łabaj, PP; Graf, AB; Darling, A; Burke, C; Noushmehr, H; Dias-Neto, E; Guo, Y; Xie, Z; Lee, PKH; Shi, L; Ruiz-Perez, CA; Zambrano, MM; Siam, R; Ouf, A; Richard, H; Lafontaine, I; Wieler, LH; Semmler, T; Prithiviraj, B; Nedunuri, N; Mehr, S; Banihashemi, K; Lista, F; Anselmo, A; Suzuki, H; Kuroda, M; Yamashita, R; Sato, Y; Kaminuma, E; Aranda, CMA; Martinez, J; Dada, C; Dybwad, M; Oliveira, M; Schuster, S; Siwo, GH; Jang, S; Seo, SC; Hwang, SH; Ossowski, S; Bezdan, D; Chaker, S; Chatziefthimiou, AD; Udekwu, K; Liungdahl, P; Sezerman, U; Meydan, C; Elhaik, E; Gonnet, G; Schriml, LM; Mongodin, E; Huttenhower, C; Gilbert, J; Eisen, J; Hirschberg, D; Hernandez, M; McGrath, K; McGrath, L; Gray, A; Osuolale, O; Segata, N; Fillo, S; Iraola, G; Zhou, Y; Chang, Y; Li, Y; Zhend, Y; Hou, W; Ramirez, A; Cepeda, M; Desnues, C; Rascovan, N; Baron, C; Nagarajan, N; Ercolini, D; Menary, W; Tighe, S; Donia, M; Levy, S; Benito, J; Jones, A; Kasarskis, A; Maritz, J; Jorgensen, E; Neches, R; Livelli, T; Barnetche, JM; Pasolli, E; Greenfield, N; Hasan, N |
| 2019-12-01 | Molecular techniques and their limitations shape our view of the holobiont | Cooke, I; Mead, O; Whalen, C; Boote, C; Moya, A; Ying, H; Robbins, S; Strugnell, JM; Darling, A; Miller, D; Voolstra, CR; Adamska, M |
| 2012-05-01 | Mrbayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space | Ronquist, F; Teslenko, M; Van Der Mark, P; Ayres, DL; Darling, A; Höhna, S; Larget, B; Liu, L; Suchard, MA; Huelsenbeck, JP |
| 2018-08-07 | Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota | Van Deynze, A; Zamora, P; Delaux, PM; Heitmann, C; Jayaraman, D; Rajasekar, S; Graham, D; Maeda, J; Gibson, D; Schwartz, KD; Berry, AM; Bhatnagar, S; Jospin, G; Darling, A; Jeannotte, R; Lopez, J; Weimer, BC; Eisen, JA; Shapiro, HY; Ané, JM; Bennett, AB |
| 2012-02-01 | Patterns of gene flow define species of thermophilic Archaea | Cadillo-Quiroz, H; Didelot, X; Held, NL; Herrera, A; Darling, A; Reno, ML; Krause, DJ; Whitaker, RJ |
| 2009-04-01 | Phylogenetic and molecular analysis of hydrogen-producing green algae | Timmins, M; Thomas-Hall, SR; Darling, A; Zhang, E; Hankamer, B; Marx, UC; Schenk, PM |
| 2017-07-03 | Porcine commensal Escherichia coli: A reservoir for class 1 integrons associated with IS26 | Reid, C; Wyrsch, E; Chowdhury, PR; Zingali, T; Liu, M; Darling, A; Chapman, T; Djordjevic, S |
| 2021-01-01 | Post-weaning shifts in microbiome composition and metabolism revealed by over 25,000 pig gut metagenome assembled genomes | Gaio, D; DeMaere, M; Anantanawat, K; Chapman, T; Djordjevic, S; Darling, A |
| 2022-08-05 | Rhometa: Population recombination rate estimation from metagenomic read datasets | Krishnan, S; DeMaere, M; Beck, D; Ostrowski, M; Seymour, J; Darling, A |
| 2012-07-24 | Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux | Lynch, EA; Langille, MGI; Darling, A; Wilbanks, EG; Haltiner, C; Shao, KSY; Starr, MO; Teiling, C; Harkins, TT; Edwards, RA; Eisen, JA; Facciotti, MT |
| 2017-05-15 | Sim3C: simulation of HiC and Meta3C proximity ligation sequencing technologies | DeMaere, M; Darling, A |
