Browsing byAuthorDarling, AE

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Issue DateTitleAuthor(s)
2017-06-02Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposalsDarling, AE; Fourment, M
2018-05-01Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposalsFourment, M; Claywell, BC; Dinh, V; McCoy, C; Matsen, FA; Darling, AE
2009-01-01Efficient Sampling of Parsimonious Inversion Histories with Application to Genome Rearrangement in YersiniaMiklos, I; Darling, AE
2008-01-01Enteropathogen Resource Integration Center (ERIC): Bioinformatics support for research on biodefense-relevant enterobacteriaGlasner, JD; Plunkett, G; Anderson, BD; Baumler, DJ; Biehl, BS; Burland, V; Cabot, EL; Darling, AE; Mau, B; Neeno-Eckwall, EC; Pot, D; Qiu, Y; Rissman, AI; Worzella, S; Zaremba, S; Fedorko, J; Hampton, T; Liss, P; Rusch, M; Shaker, M; Shaull, L; Shetty, P; Thotakura, S; Whitmore, J; Blattner, FR; Greene, JM; Perna, NT
2019-01-01Evaluating probabilistic programming and fast variational Bayesian inference in phylogeneticsFourment, M; Darling, AE
2017-01-01Evaluation of ddRADseq for reduced representation metagenome sequencingLiu, MY; Worden, P; Monahan, LG; DeMaere, MZ; Burke, CM; Djordjevic, SP; Charles, IG; Darling, AE
2017-05-16Evaluation of ddRADseq for reduced representation metagenome sequencingDarling, AE; Liu, M; Worden, P; Monahan, L; Demaere, M; Burke, C; Djordjevic, S; Charles, I
2023Evaluation of recombination detection methods for viral sequencing.Jaya, FR; Brito, BP; Darling, AE
2023-07-25Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics.Brito, BP; Frost, MJ; Anantanawat, K; Jaya, F; Batterham, T; Djordjevic, SP; Chang, W-S; Holmes, EC; Darling, AE; Kirkland, PD
2022-06-16Fidelity of Hyperbolic Space for Bayesian Phylogenetic InferenceMacaulay, M; Darling, AE; Fourment, M
2014-02-24The genome of Clostridium difficile 5.3Darling, AE; Worden, P; Chapman, TA; Chowdhury, PR; Charles, IG; Djordjevic, SP
2006-05-31Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coliMau, B; Glasner, JD; Darling, AE; Perna, NT
2006Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli.Mau, B; Glasner, JD; Darling, AE; Perna, NT
2019-06-01Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignmentCoilID, DA; Jospin, G; Darling, AE; Wallis, C; Davis, IJ; Harris, S; Eisen, JA; Holcombe, LJ; O'Flynn, C
2022-01Hackflex: low-cost, high-throughput, Illumina Nextera Flex library construction.Gaio, D; Anantanawat, K; To, J; Liu, M; Monahan, L; Darling, AE
2012-10-01Hidden breakpoints in genome alignmentsKehr, B; Reinert, K; Darling, AE
2019-02-13High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaecheiMonahan, LG; Demaere, MZ; Cummins, ML; Djordjevic, SP; Roy Chowdhury, P; Darling, AE
2019-03-01Identification of a novel lineage of plasmids within phylogenetically diverse subclades of IncHI2-ST1 plasmidsRoy Chowdhury, P; Fourment, M; DeMaere, MZ; Monahan, L; Merlino, J; Gottlieb, T; Darling, AE; Djordjevic, SP
2012-06-19Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coliDidelot, X; Méric, G; Falush, D; Darling, AE
2017-05-25The impact of migratory flyways on the spread of avian influenza virus in North AmericaFourment, M; Darling, AE; Holmes, EC