Browsing by Author Darling, AE

Showing results 1 to 20 of 65  next >
Issue DateTitleAuthor(s)
27-Feb-2019Whole-genome analysis of extraintestinal Escherichia coli sequence type 73 from a single hospital over a 2 year period identified different circulating clonal groups.Bogema, DR; McKinnon, J; Liu, M; Hitchick, N; Miller, N; Venturini, C; Iredell, J; Darling, AE; Roy Chowdury, P; Djordjevic, SP
13-Feb-2019High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaecheiMonahan, LG; Demaere, MZ; Cummins, ML; Djordjevic, SP; Roy Chowdhury, P; Darling, AE
8-Feb-2019CAMISIM: Simulating metagenomes and microbial communitiesFritz, A; Hofmann, P; Majda, S; Dahms, E; Dröge, J; Fiedler, J; Lesker, TR; Belmann, P; Demaere, MZ; Darling, AE; Sczyrba, A; Bremges, A; McHardy, AC
20-Jul-2018Visualization of Biomedical DataO'Donoghue, SI; Baldi, BF; Clark, SJ; Darling, AE; Hogan, JM; Kaur, S; Maier-Hein, L; McCarthy, DJ; Moore, WJ; Stenau, E; Swedlow, JR; Vuong, J; Procter, JB
5-May-2018Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvaeDeutscher, AT; Burke, CM; Darling, AE; Riegler, M; Reynolds, OL; Chapman, TA
1-May-2018Online Bayesian phylogenetic inference: Theoretical foundations via sequential Monte CarloDinh, V; Darling, AE; Matsen, FA
1-May-2018Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposalsFourment, M; Claywell, BC; Dinh, V; McCoy, C; Matsen, FA; Darling, AE
27-Apr-2018Analysis of Theileria orientalis draft genome sequences reveals potential species-level divergence of the Ikeda, Chitose and Buffeli genotypesBogema, DR; Micallef, ML; Liu, M; Padula, MP; Djordjevic, SP; Darling, AE; Jenkins, C
13-Apr-2018CAMISIM: Simulating metagenomes and microbial communitiesDarling, AE; Fritz, A; Hofmann, P; Majda, S; Dahms, E; Droge, J; Fiedler, J; Lesker, TR; Belmann, P; DeMaere, MZ; Sczyrba, A; Bremges, A; McHardy, AC
1-Jan-2018Local and relaxed clocks: The best of both worldsFourment, M; Darling, AE
1-Jan-2018Sim3C: Simulation of Hi-C and Meta3C proximity ligation sequencing technologiesDeMaere, MZ; Darling, AE
1-Dec-2017Porcine commensal escherichia coli: A reservoir for class 1 integrons associated with IS26Reid, CJ; Wyrsch, ER; Chowdhury, PR; Zingali, T; Liu, M; Darling, AE; Chapman, TA; Djordjevic, SP
Dec-2017Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26.Reid, CJ; Wyrsch, ER; Roy Chowdhury, P; Zingali, T; Liu, M; Darling, AE; Chapman, TA; Djordjevic, SP
31-Oct-2017Critical Assessment of Metagenome Interpretation - A benchmark of metagenomics softwareSczyrba, A; Hofmann, P; Belmann, P; Koslicki, D; Janssen, S; Dröge, J; Gregor, I; Majda, S; Fiedler, J; Dahms, E; Bremges, A; Fritz, A; Garrido-Oter, R; Jørgensen, TS; Shapiro, N; Blood, PD; Gurevich, A; Bai, Y; Turaev, D; Demaere, MZ; Chikhi, R; Nagarajan, N; Quince, C; Meyer, F; Balvočiutė, M; Hansen, LH; Sørensen, SJ; Chia, BKH; Denis, B; Froula, JL; Wang, Z; Egan, R; Don Kang, D; Cook, JJ; Deltel, C; Beckstette, M; Lemaitre, C; Peterlongo, P; Rizk, G; Lavenier, D; Wu, YW; Singer, SW; Jain, C; Strous, M; Klingenberg, H; Meinicke, P; Barton, MD; Lingner, T; Lin, HH; Liao, YC; Silva, GGZ; Cuevas, DA; Edwards, RA; Saha, S; Piro, VC; Renard, BY; Pop, M; Klenk, HP; Göker, M; Kyrpides, NC; Woyke, T; Vorholt, JA; Schulze-Lefert, P; Rubin, EM; Darling, AE; Rattei, T; McHardy, AC
21-Sep-2017DESMAN: A new tool for de novo extraction of strains from metagenomesQuince, C; Delmont, TO; Raguideau, S; Alneberg, J; Darling, AE; Collins, G; Eren, AM
2-Jun-2017Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposalsDarling, AE; Fourment, M
25-May-2017The impact of migratory flyways on the spread of avian influenza virus in North AmericaFourment, M; Darling, AE; Holmes, EC
16-May-2017Evaluation of ddRADseq for reduced representation metagenome sequencingDarling, AE; Liu, M; Worden, P; Monahan, L; Demaere, M; Burke, C; Djordjevic, S; Charles, I
15-May-2017Sim3C: simulation of HiC and Meta3C proximity ligation sequencing technologiesDarling, AE; DeMaere, M
9-Jan-2017Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics softwareDarling, AE