Browsing by Author Darling, AE

Showing results 1 to 20 of 69  next >
Issue DateTitleAuthor(s)
Dec-2017Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26.Reid, CJ; Wyrsch, ER; Roy Chowdhury, P; Zingali, T; Liu, M; Darling, AE; Chapman, TA; Djordjevic, SP
27-Nov-2017Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals.Fourment, M; Claywell, BC; Dinh, V; McCoy, C; Matsen Iv, FA; Darling, AE
15-Nov-2017Sim3C: simulation of Hi-C and Meta3C proximity ligation sequencing technologies.DeMaere, MZ; Darling, AE
Nov-2017Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.Sczyrba, A; Hofmann, P; Belmann, P; Koslicki, D; Janssen, S; Dröge, J; Gregor, I; Majda, S; Fiedler, J; Dahms, E; Bremges, A; Fritz, A; Garrido-Oter, R; Jørgensen, TS; Shapiro, N; Blood, PD; Gurevich, A; Bai, Y; Turaev, D; DeMaere, MZ; Chikhi, R; Nagarajan, N; Quince, C; Meyer, F; Balvočiūtė, M; Hansen, LH; Sørensen, SJ; Chia, BKH; Denis, B; Froula, JL; Wang, Z; Egan, R; Don Kang, D; Cook, JJ; Deltel, C; Beckstette, M; Lemaitre, C; Peterlongo, P; Rizk, G; Lavenier, D; Wu, Y-W; Singer, SW; Jain, C; Strous, M; Klingenberg, H; Meinicke, P; Barton, MD; Lingner, T; Lin, H-H; Liao, Y-C; Silva, GGZ; Cuevas, DA; Edwards, RA; Saha, S; Piro, VC; Renard, BY; Pop, M; Klenk, H-P; Göker, M; Kyrpides, NC; Woyke, T; Vorholt, JA; Schulze-Lefert, P; Rubin, EM; Darling, AE; Rattei, T; McHardy, AC
21-Sep-2017DESMAN: a new tool for de novo extraction of strains from metagenomes.Quince, C; Delmont, TO; Raguideau, S; Alneberg, J; Darling, AE; Collins, G; Eren, AM
Sep-2017The rapid in vivo evolution of Pseudomonas aeruginosa in ventilator-associated pneumonia patients leads to attenuated virulence.Wang, K; Chen, Y-Q; Salido, MM; Kohli, GS; Kong, J-L; Liang, H-J; Yao, Z-T; Xie, Y-T; Wu, H-Y; Cai, S-Q; Drautz-Moses, DI; Darling, AE; Schuster, SC; Yang, L; Ding, Y
3-Jul-2017Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26Darling, AE; Reid, C; Wyrsch, E; Roy Chowdhury, P; Zingali, T; Liu, M; Djordjevic, S; Chapman, T
2-Jun-2017Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposalsDarling, AE; Fourment, M
25-May-2017The Impact of Migratory Flyways on the Spread of Avian Influenza Virus in North AmericaFourment; Darling, AE; Holmes, EC
16-May-2017Evaluation of ddRADseq for reduced representation metagenome sequencingDarling, AE; Liu, M; Worden, P; Monahan, L; Demaere, M; Burke, C; Djordjevic, S; Charles, I
15-May-2017Sim3C: simulation of HiC and Meta3C proximity ligation sequencing technologiesDarling, AE; DeMaere, M
9-Jan-2017Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics softwareDarling, AE
Jan-2017Evaluation of ddRADseq for reduced representation metagenome sequencing.Liu, MY; Worden, P; Monahan, LG; DeMaere, MZ; Burke, CM; Djordjevic, SP; Charles, IG; Darling, AE
Jan-2016Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C).DeMaere, MZ; Darling, AE
Jan-2016A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq.Burke, CM; Darling, AE
10-Mar-2015Comparative genomic analysis of a multiple antimicrobial resistant enterotoxigenic E. coli O157 lineage from Australian pigsWyrsch, E; Chowdhury, PR; Abraham, S; Santos, J; Darling, AE; Charles, IG; Chapman, TA; Djordjevic, SP
10-Mar-2015Comparative genomic analysis of a multiple antimicrobial resistant enterotoxigenic E. coli O157 lineage from Australian pigs.Wyrsch, E; Roy Chowdhury, P; Abraham, S; Santos, J; Darling, AE; Charles, IG; Chapman, TA; Djordjevic, SP
Jan-2015Swabs to genomes: a comprehensive workflow.Dunitz, MI; Lang, JM; Jospin, G; Darling, AE; Eisen, JA; Coil, DA
Jan-2015Draft genome sequences of 26 porphyromonas strains isolated from the canine oral microbiome.Coil, DA; Alexiev, A; Wallis, C; O'Flynn, C; Deusch, O; Davis, I; Horsfall, A; Kirkwood, N; Jospin, G; Eisen, JA; Harris, S; Darling, AE
13-Nov-2014Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response.Becker, EA; Seitzer, PM; Tritt, A; Larsen, D; Krusor, M; Yao, AI; Wu, D; Madern, D; Eisen, JA; Darling, AE; Facciotti, MT