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| Issue Date | Title | Author(s) |
| 2020-03-01 | 19 Dubious Ways to Compute the Marginal Likelihood of a Phylogenetic Tree Topology. | Fourment, M; Magee, AF; Whidden, C; Bilge, A; Matsen, FA; Minin, VN |
| 2020-03-01 | Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies. | Whidden, C; Claywell, BC; Fisher, T; Magee, AF; Fourment, M; Matsen, FA |
| 2019-07-15 | Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics | Fourment, M; Darling, A |
| 2019-06-27 | Trial by phylogenetics - Evaluating the Multi-Species Coalescent for phylogenetic inference on taxa with high levels of paralogy (Gonyaulacales, Dinophyceae) | Kretzschmar, AL; Verma, A; Murray, S; Kahlke, T; Fourment, M; Darling, A |
| 2019-03-01 | Identification of a novel lineage of plasmids within phylogenetically diverse subclades of IncHI2-ST1 plasmids | Roy Chowdhury, P; Fourment, M; DeMaere, MZ; Monahan, L; Merlino, J; Gottlieb, T; Darling, AE; Djordjevic, SP |
| 2019-01-01 | BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis | Bouckaert, R; Vaughan, TG; Barido-Sottani, J; Duchêne, S; Fourment, M; Gavryushkina, A; Heled, J; Jones, G; Kühnert, D; De Maio, N; Matschiner, M; Mendes, FK; Müller, NF; Ogilvie, HA; Du Plessis, L; Popinga, A; Rambaut, A; Rasmussen, D; Siveroni, I; Suchard, MA; Wu, CH; Xie, D; Zhang, C; Stadler, T; Drummond, AJ |
| 2019-01-01 | BEAST 2.5: An Advanced Software Platform for Bayesian Evolutionary Analysis | Bouckaert, R; Vaughan, T; Barido-Sottani, J; Duchene, S; Fourment, M; Gavryushkina, A; Heled, J; Jones, G; Kuhnert, D; de Maio, N; Matschiner, M; Mendes, F; Muller, N; Ogilvie, H; du Plessis, L; Popinga, A; Rambaut, A; Rasmussen, D; Siveroni, I; Suchard, M; Wu, C-H; Xie, D; Zhang, C; Stadler, T; Drummond, A |
| 2019-01-01 | Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics | Fourment, M; Darling, AE |
| 2018-12-01 | The Biological Object Notation (BON): A structured file format for biological data | Buchmann, JP; Fourment, M; Holmes, EC |
| 2018-07-03 | Local and relaxed clocks, the best of both worlds | Fourment, M; Darling, AE |
| 2018-05-01 | Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals | Fourment, M; Claywell, BC; Dinh, V; McCoy, C; Matsen, FA; Darling, AE |
| 2018-03-21 | Local and relaxed clocks, the best of both worlds | Fourment, M; Darling, A |
| 2018-01-01 | Local and relaxed clocks: The best of both worlds | Fourment, M; Darling, AE |
| 2018-01-01 | A Surrogate Function for One-Dimensional Phylogenetic Likelihoods | Claywell, BC; Dinh, V; Fourment, M; McCoy, CO; Matsen, FA |
| 2017-06-02 | Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals | Darling, AE; Fourment, M |
| 2017-05-25 | The impact of migratory flyways on the spread of avian influenza virus in North America | Fourment, M; Darling, AE; Holmes, EC |
| 2016-11-01 | Genome-scale rates of evolutionary change in bacteria | Duchêne, S; Holt, KE; Weill, FX; Le Hello, S; Hawkey, J; Edwards, DJ; Fourment, M; Holmes, EC |
| 2016-02-17 | Seqotron: A user-friendly sequence editor for Mac OS X | Fourment, M; Holmes, EC |
| 2016-01-21 | Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus | Bos, KI; Herbig, A; Sahl, J; Waglechner, N; Fourment, M; Forrest, SA; Klunk, J; Schuenemann, VJ; Poinar, D; Kuch, M; Golding, GB; Dutour, O; Keim, P; Wagner, DM; Holmes, EC; Krause, J; Poinar, HN |
| 2015-01-16 | The contrasting phylodynamics of human inuenza B viruses | Vijaykrishna, D; Holmes, EC; Joseph, U; Fourment, M; Su, YCF; Halpin, R; Lee, RTC; Deng, YM; Gunalan, V; Lin, X; Stockwell, TB; Fedorova, NB; Zhou, B; Spirason, N; Küuhnert, D; Bošková, V; Stadler, T; Costa, AM; Dwyer, DE; Huang, QS; Jennings, LC; Rawlinson, W; Sullivan, SG; Hurt, AC; Maurer-Stroh, S; Wentworth, DE; Smith, GJD; Barr, IG |
