Browsing byAuthorFourment, M

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Issue DateTitleAuthor(s)
2020-03-0119 Dubious Ways to Compute the Marginal Likelihood of a Phylogenetic Tree Topology.Fourment, M; Magee, AF; Whidden, C; Bilge, A; Matsen, FA; Minin, VN
2020-03-01Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies.Whidden, C; Claywell, BC; Fisher, T; Magee, AF; Fourment, M; Matsen, FA
2019-07-15Evaluating probabilistic programming and fast variational Bayesian inference in phylogeneticsFourment, M; Darling, A
2019-06-27Trial by phylogenetics - Evaluating the Multi-Species Coalescent for phylogenetic inference on taxa with high levels of paralogy (Gonyaulacales, Dinophyceae)Kretzschmar, AL; Verma, A; Murray, S; Kahlke, T; Fourment, M; Darling, A
2019-03-01Identification of a novel lineage of plasmids within phylogenetically diverse subclades of IncHI2-ST1 plasmidsRoy Chowdhury, P; Fourment, M; DeMaere, MZ; Monahan, L; Merlino, J; Gottlieb, T; Darling, AE; Djordjevic, SP
2019-01-01BEAST 2.5: An advanced software platform for Bayesian evolutionary analysisBouckaert, R; Vaughan, TG; Barido-Sottani, J; Duchêne, S; Fourment, M; Gavryushkina, A; Heled, J; Jones, G; Kühnert, D; De Maio, N; Matschiner, M; Mendes, FK; Müller, NF; Ogilvie, HA; Du Plessis, L; Popinga, A; Rambaut, A; Rasmussen, D; Siveroni, I; Suchard, MA; Wu, CH; Xie, D; Zhang, C; Stadler, T; Drummond, AJ
2019-01-01BEAST 2.5: An Advanced Software Platform for Bayesian Evolutionary AnalysisBouckaert, R; Vaughan, T; Barido-Sottani, J; Duchene, S; Fourment, M; Gavryushkina, A; Heled, J; Jones, G; Kuhnert, D; de Maio, N; Matschiner, M; Mendes, F; Muller, N; Ogilvie, H; du Plessis, L; Popinga, A; Rambaut, A; Rasmussen, D; Siveroni, I; Suchard, M; Wu, C-H; Xie, D; Zhang, C; Stadler, T; Drummond, A
2019-01-01Evaluating probabilistic programming and fast variational Bayesian inference in phylogeneticsFourment, M; Darling, AE
2018-12-01The Biological Object Notation (BON): A structured file format for biological dataBuchmann, JP; Fourment, M; Holmes, EC
2018-07-03Local and relaxed clocks, the best of both worldsFourment, M; Darling, AE
2018-05-01Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposalsFourment, M; Claywell, BC; Dinh, V; McCoy, C; Matsen, FA; Darling, AE
2018-03-21Local and relaxed clocks, the best of both worldsFourment, M; Darling, A
2018-01-01Local and relaxed clocks: The best of both worldsFourment, M; Darling, AE
2018-01-01A Surrogate Function for One-Dimensional Phylogenetic LikelihoodsClaywell, BC; Dinh, V; Fourment, M; McCoy, CO; Matsen, FA
2017-06-02Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposalsDarling, AE; Fourment, M
2017-05-25The impact of migratory flyways on the spread of avian influenza virus in North AmericaFourment, M; Darling, AE; Holmes, EC
2016-11-01Genome-scale rates of evolutionary change in bacteriaDuchêne, S; Holt, KE; Weill, FX; Le Hello, S; Hawkey, J; Edwards, DJ; Fourment, M; Holmes, EC
2016-02-17Seqotron: A user-friendly sequence editor for Mac OS XFourment, M; Holmes, EC
2016-01-21Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focusBos, KI; Herbig, A; Sahl, J; Waglechner, N; Fourment, M; Forrest, SA; Klunk, J; Schuenemann, VJ; Poinar, D; Kuch, M; Golding, GB; Dutour, O; Keim, P; Wagner, DM; Holmes, EC; Krause, J; Poinar, HN
2015-01-16The contrasting phylodynamics of human inuenza B virusesVijaykrishna, D; Holmes, EC; Joseph, U; Fourment, M; Su, YCF; Halpin, R; Lee, RTC; Deng, YM; Gunalan, V; Lin, X; Stockwell, TB; Fedorova, NB; Zhou, B; Spirason, N; Küuhnert, D; Bošková, V; Stadler, T; Costa, AM; Dwyer, DE; Huang, QS; Jennings, LC; Rawlinson, W; Sullivan, SG; Hurt, AC; Maurer-Stroh, S; Wentworth, DE; Smith, GJD; Barr, IG