| Issue Date | Title | Author(s) |
| 2023-07-25 | Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics. | Brito, BP; Frost, MJ; Anantanawat, K; Jaya, F; Batterham, T; Djordjevic, SP; Chang, W-S; Holmes, EC; Darling, AE; Kirkland, PD |
| 2022-10-26 | Diverse RNA Viruses Associated with Diatom, Eustigmatophyte, Dinoflagellate, and Rhodophyte Microalgae Cultures. | Charon, J; Kahlke, T; Larsson, ME; Abbriano, R; Commault, A; Burke, J; Ralph, P; Holmes, EC; Parrish, CR |
| 2022-10-26 | Diverse RNA Viruses Associated with Diatom, Eustigmatophyte, Dinoflagellate, and Rhodophyte Microalgae Cultures. | Charon, J; Kahlke, T; Larsson, ME; Abbriano, R; Commault, A; Burke, J; Ralph, P; Holmes, EC; Parrish, CR |
| 2022-05 | Australia as a global sink for the genetic diversity of avian influenza A virus. | Wille, M; Grillo, V; Ban de Gouvea Pedroso, S; Burgess, GW; Crawley, A; Dickason, C; Hansbro, PM; Hoque, MA; Horwood, PF; Kirkland, PD; Kung, NY-H; Lynch, SE; Martin, S; McArthur, M; O'Riley, K; Read, AJ; Warner, S; Hoye, BJ; Lisovski, S; Leen, T; Hurt, AC; Butler, J; Broz, I; Davies, KR; Mileto, P; Neave, MJ; Stevens, V; Breed, AC; Lam, TTY; Holmes, EC; Klaassen, M; Wong, FYK; Stern, A |
| 2021-12-01 | High-resolution Metatranscriptomic Characterization of the Pulmonary RNA Virome After Lung Transplantation. | Mitchell, AB; Li, C-X; Oliver, BGG; Holmes, EC; Glanville, AR |
| 2021-12-01 | Australia as a global sink for the genetic diversity of avian influenza A virus | Wille, M; Grillo, V; de Gouvea Pedroso, SB; Burgess, GW; Crawley, A; Dickason, C; Hansbro, PM; Hoque, A; Horwood, PF; Kirkland, PD; Kung, NY-H; Lynch, SE; Martin, S; McArthur, M; O’Riley, K; Read, AJ; Warner, S; Hoye, BJ; Lisovski, S; Leen, T; Hurt, AC; Butler, J; Broz, I; Davies, KR; Mileto, P; Neave, M; Stevens, V; Breed, A; Lam, TTY; Holmes, EC; Klaassen, M; Wong, FYK |
| 2021-09-14 | Revealing RNA virus diversity and evolution in unicellular algae transcriptomes | Charon, J; Murray, S; Holmes, EC |
| 2021-01-01 | A household case evidences shorter shedding of SARS-CoV-2 in naturally infected cats compared to their human owners | Neira, V; Brito, B; Agüero, B; Berrios, F; Valdés, V; Gutierrez, A; Ariyama, N; Espinoza, P; Retamal, P; Holmes, EC; Gonzalez-Reiche, AS; Khan, Z; van de Guchte, A; Dutta, J; Miorin, L; Kehrer, T; Galarce, N; Almonacid, LI; Levican, J; van Bakel, H; García-Sastre, A; Medina, RA |
| 2018-12-01 | The Biological Object Notation (BON): A structured file format for biological data | Buchmann, JP; Fourment, M; Holmes, EC |
| 2018-10-04 | An Atypical Parvovirus Drives Chronic Tubulointerstitial Nephropathy and Kidney Fibrosis | Roediger, B; Lee, Q; Tikoo, S; Cobbin, JCA; Henderson, JM; Jormakka, M; O'Rourke, MB; Padula, MP; Pinello, N; Henry, M; Wynne, M; Santagostino, SF; Brayton, CF; Rasmussen, L; Lisowski, L; Tay, SS; Harris, DC; Bertram, JF; Dowling, JP; Bertolino, P; Lai, JH; Wu, W; Bachovchin, WW; Wong, JJL; Gorrell, MD; Shaban, B; Holmes, EC; Jolly, CJ; Monette, S; Weninger, W |
| 2018-06-02 | Virological sampling of inaccessible wildlife with drones | Geoghegan, JL; Pirotta, V; Harvey, E; Smith, A; Buchmann, JP; Ostrowski, M; Eden, JS; Harcourt, R; Holmes, EC |
| 2017-05-25 | The impact of migratory flyways on the spread of avian influenza virus in North America | Fourment, M; Darling, AE; Holmes, EC |
| 2016-11-01 | Genome-scale rates of evolutionary change in bacteria | Duchêne, S; Holt, KE; Weill, FX; Le Hello, S; Hawkey, J; Edwards, DJ; Fourment, M; Holmes, EC |
| 2016-02-17 | Seqotron: A user-friendly sequence editor for Mac OS X | Fourment, M; Holmes, EC |
| 2016-01-21 | Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus | Bos, KI; Herbig, A; Sahl, J; Waglechner, N; Fourment, M; Forrest, SA; Klunk, J; Schuenemann, VJ; Poinar, D; Kuch, M; Golding, GB; Dutour, O; Keim, P; Wagner, DM; Holmes, EC; Krause, J; Poinar, HN |
| 2015-01-16 | The contrasting phylodynamics of human inuenza B viruses | Vijaykrishna, D; Holmes, EC; Joseph, U; Fourment, M; Su, YCF; Halpin, R; Lee, RTC; Deng, YM; Gunalan, V; Lin, X; Stockwell, TB; Fedorova, NB; Zhou, B; Spirason, N; Küuhnert, D; Bošková, V; Stadler, T; Costa, AM; Dwyer, DE; Huang, QS; Jennings, LC; Rawlinson, W; Sullivan, SG; Hurt, AC; Maurer-Stroh, S; Wentworth, DE; Smith, GJD; Barr, IG |
| 2014-07-24 | Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data | Fourment, M; Holmes, EC |
| 2014-01-01 | Yersinia pestis and the Plague of Justinian 541-543 AD: A genomic analysis | Wagner, DM; Klunk, J; Harbeck, M; Devault, A; Waglechner, N; Sahl, JW; Enk, J; Birdsell, DN; Kuch, M; Lumibao, C; Poinar, D; Pearson, T; Fourment, M; Golding, B; Riehm, JM; Earn, DJD; DeWitte, S; Rouillard, JM; Grupe, G; Wiechmann, I; Bliska, JB; Keim, PS; Scholz, HC; Holmes, EC; Poinar, H |
