Browsing byAuthorDarling, A

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Issue DateTitleAuthor(s)
2019-04-04A new massively-parallel transposon mutagenesis approach comparing multiple datasets identifies novel mechanisms of action and resistance to triclosanYasir, M; Turner, K; Bastkowski, S; Page, A; Telatin, A; Phan, M-D; Monahan, L; Darling, A; Webber, M; Charles, I
2010The Amphimedon Queenslandica Genome And The Evolution Of Animal ComplexitySrivastava, M; Simakov, O; Chapman, J; Fahey, B; Gauthier, M; Mitros, T; Richards, G; Conaco, C; Dacre, M; Hellsten, U; Larroux, C; Putnam, N; Stanke, M; Adamska, M; Darling, A; Degnan, S; Oakley, T; Plachetzki, D; Zhai, Y; Adamski, M; Calcino, A
2017-01-01Area Wide Integrated Pest Management Incorporating the Sterile Insect Technique: Gut Microbiota Impacts on Tephritid Fitness and PerformanceShuttleworth, LA; Deutscher, AT; Osborne, T; Khan, MAM; Collins, D; Burke, C; Chapman, T; Darling, A; Riegler, M; Reynolds, OL; Mason, PG; Gillespie, DR; Vincent, C
2011-12-01Assemblathon 1: A competitive assessment of de novo short read assembly methodsEarl, D; Bradnam, K; St. John, J; Darling, A; Lin, D; Fass, J; Yu, HOK; Buffalo, V; Zerbino, DR; Diekhans, M; Nguyen, N; Ariyaratne, PN; Sung, WK; Ning, Z; Haimel, M; Simpson, JT; Fonseca, NA; Birol, I; Docking, TR; Ho, IY; Rokhsar, DS; Chikhi, R; Lavenier, D; Chapuis, G; Naquin, D; Maillet, N; Schatz, MC; Kelley, DR; Phillippy, AM; Koren, S; Yang, SP; Wu, W; Chou, WC; Srivastava, A; Shaw, TI; Ruby, JG; Skewes-Cox, P; Betegon, M; Dimon, MT; Solovyev, V; Seledtsov, I; Kosarev, P; Vorobyev, D; Ramirez-Gonzalez, R; Leggett, R; MacLean, D; Xia, F; Luo, R; Li, Z; Xie, Y; Liu, B; Gnerre, S; MacCallum, I; Przybylski, D; Ribeiro, FJ; Sharpe, T; Hall, G; Kersey, PJ; Durbin, R; Jackman, SD; Chapman, JA; Huang, X; DeRisi, JL; Caccamo, M; Li, Y; Jaffe, DB; Green, RE; Haussler, D; Korf, I; Paten, B
2012-01-01BEAGLE: An application programming interface and high-performance computing library for statistical phylogeneticsAyres, DL; Darling, A; Zwickl, DJ; Beerli, P; Holder, MT; Lewis, PO; Huelsenbeck, JP; Ronquist, F; Swofford, DL; Cummings, MP; Rambaut, A; Suchard, MA
2019bin3C : Exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes (MAGs)DeMaere, M; Darling, A
2003-05-01Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457TWei, J; Goldberg, MB; Burland, V; Venkatesan, MM; Deng, W; Fournier, G; Mayhew, GF; Plunkett, G; Rose, DJ; Darling, A; Mau, B; Perna, NT; Payne, SM; Runyen-Janecky, LJ; Zhou, S; Schwartz, DC; Blattner, FR
2016-05-13Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C)DeMaere, M; Darling, A
2016-04-20Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C)DeMaere, M; Darling, A
2014-03-05Diversification of a single ancestral gene into a successful toxin superfamily in highly venomous Australian funnel-web spidersPineda, SS; Sollod, BL; Wilson, D; Darling, A; Sunagar, K; Undheim, EAB; Kely, L; Antunes, A; Fry, BG; King, GF
2017-06-02Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposalsFourment, M; Claywell, B; Dinh, V; McCoy, C; Matsen, F; Darling, A
2019-07-15Evaluating probabilistic programming and fast variational Bayesian inference in phylogeneticsFourment, M; Darling, A
2023-04Fidelity of hyperbolic space for Bayesian phylogenetic inference.Macaulay, M; Darling, A; Fourment, M; Noble, WS
2019-03-14Genomes from Bacteria Associated with the Canine Oral Cavity: a Test Case for Automated Genome-Based Taxonomic AssignmentCoil, D; Jospin, G; Darling, A; Wallis, C; Davis, I; Harris, S; Eisen, J; Holcombe, L; O’Flynn, C
2019-09-23Hackflex: low cost Illumina sequencing library construction for high sample countsGaio, D; To, J; Liu, M; Monahan, L; Anantanawat, K; Darling, A
2013-01-01Indigenous Vibrio cholerae strains from a non-endemic region are pathogenicIslam, A; Labbate, M; Djordjevic, SP; Alam, M; Darling, A; Melvold, J; Holmes, AJ; Johura, FT; Cravioto, A; Charles, IG; Stokes, HW
2010Inference Of Homologous Recombination In Bacteria Using Whole-genome SequencesDidelot, X; Lawson, D; Darling, A; Falush, D
2009-02-01Inferring genomic flux in bacteriaDidelot, X; Darling, A; Falush, D
2013-02-12Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequenceRands, CM; Darling, A; Fujita, M; Kong, L; Webster, MT; Clabaut, C; Emes, RD; Heger, A; Meader, S; Hawkins, MB; Eisen, MB; Teiling, C; Affourtit, J; Boese, B; Grant, PR; Grant, BR; Eisen, JA; Abzhanov, A; Ponting, CP
2013-07-15Insights into the phylogeny and coding potential of microbial dark matterRinke, C; Schwientek, P; Sczyrba, A; Ivanova, NN; Anderson, IJ; Cheng, JF; Darling, A; Malfatti, S; Swan, BK; Gies, EA; Dodsworth, JA; Hedlund, BP; Tsiamis, G; Sievert, SM; Liu, WT; Eisen, JA; Hallam, SJ; Kyrpides, NC; Stepanauskas, R; Rubin, EM; Hugenholtz, P; Woyke, T