| Issue Date | Title | Author(s) |
| 2015-01-01 | Metagenomic Chromosome Conformation Capture (3C): Techniques, applications, and challenges | Darling, A; Liu, M |
| 2019-03-14 | Genomes from Bacteria Associated with the Canine Oral Cavity: a Test Case for Automated Genome-Based Taxonomic Assignment | Coil, D; Jospin, G; Darling, A; Wallis, C; Davis, I; Harris, S; Eisen, J; Holcombe, L; O’Flynn, C |
| 2011-12-01 | Assemblathon 1: A competitive assessment of de novo short read assembly methods | Earl, D; Bradnam, K; St. John, J; Darling, A; Lin, D; Fass, J; Yu, HOK; Buffalo, V; Zerbino, DR; Diekhans, M; Nguyen, N; Ariyaratne, PN; Sung, WK; Ning, Z; Haimel, M; Simpson, JT; Fonseca, NA; Birol, I; Docking, TR; Ho, IY; Rokhsar, DS; Chikhi, R; Lavenier, D; Chapuis, G; Naquin, D; Maillet, N; Schatz, MC; Kelley, DR; Phillippy, AM; Koren, S; Yang, SP; Wu, W; Chou, WC; Srivastava, A; Shaw, TI; Ruby, JG; Skewes-Cox, P; Betegon, M; Dimon, MT; Solovyev, V; Seledtsov, I; Kosarev, P; Vorobyev, D; Ramirez-Gonzalez, R; Leggett, R; MacLean, D; Xia, F; Luo, R; Li, Z; Xie, Y; Liu, B; Gnerre, S; MacCallum, I; Przybylski, D; Ribeiro, FJ; Sharpe, T; Hall, G; Kersey, PJ; Durbin, R; Jackman, SD; Chapman, JA; Huang, X; DeRisi, JL; Caccamo, M; Li, Y; Jaffe, DB; Green, RE; Haussler, D; Korf, I; Paten, B |
| 2017-07-03 | Porcine commensal Escherichia coli: A reservoir for class 1 integrons associated with IS26 | Reid, C; Wyrsch, E; Chowdhury, PR; Zingali, T; Liu, M; Darling, A; Chapman, T; Djordjevic, S |
| 2018-03-21 | Local and relaxed clocks, the best of both worlds | Fourment, M; Darling, A |
| 2013-02-12 | Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence | Rands, CM; Darling, A; Fujita, M; Kong, L; Webster, MT; Clabaut, C; Emes, RD; Heger, A; Meader, S; Hawkins, MB; Eisen, MB; Teiling, C; Affourtit, J; Boese, B; Grant, PR; Grant, BR; Eisen, JA; Abzhanov, A; Ponting, CP |
| 2016-05-13 | Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C) | DeMaere, M; Darling, A |
| 2013-07-15 | Insights into the phylogeny and coding potential of microbial dark matter | Rinke, C; Schwientek, P; Sczyrba, A; Ivanova, NN; Anderson, IJ; Cheng, JF; Darling, A; Malfatti, S; Swan, BK; Gies, EA; Dodsworth, JA; Hedlund, BP; Tsiamis, G; Sievert, SM; Liu, WT; Eisen, JA; Hallam, SJ; Kyrpides, NC; Stepanauskas, R; Rubin, EM; Hugenholtz, P; Woyke, T |
| 2019-07-15 | Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics | Fourment, M; Darling, A |
| 2014-03-05 | Diversification of a single ancestral gene into a successful toxin superfamily in highly venomous Australian funnel-web spiders | Pineda, SS; Sollod, BL; Wilson, D; Darling, A; Sunagar, K; Undheim, EAB; Kely, L; Antunes, A; Fry, BG; King, GF |
