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Issue DateTitleAuthor(s)
2015-01-01Metagenomic Chromosome Conformation Capture (3C): Techniques, applications, and challengesDarling, A; Liu, M
2019-03-14Genomes from Bacteria Associated with the Canine Oral Cavity: a Test Case for Automated Genome-Based Taxonomic AssignmentCoil, D; Jospin, G; Darling, A; Wallis, C; Davis, I; Harris, S; Eisen, J; Holcombe, L; O’Flynn, C
2011-12-01Assemblathon 1: A competitive assessment of de novo short read assembly methodsEarl, D; Bradnam, K; St. John, J; Darling, A; Lin, D; Fass, J; Yu, HOK; Buffalo, V; Zerbino, DR; Diekhans, M; Nguyen, N; Ariyaratne, PN; Sung, WK; Ning, Z; Haimel, M; Simpson, JT; Fonseca, NA; Birol, I; Docking, TR; Ho, IY; Rokhsar, DS; Chikhi, R; Lavenier, D; Chapuis, G; Naquin, D; Maillet, N; Schatz, MC; Kelley, DR; Phillippy, AM; Koren, S; Yang, SP; Wu, W; Chou, WC; Srivastava, A; Shaw, TI; Ruby, JG; Skewes-Cox, P; Betegon, M; Dimon, MT; Solovyev, V; Seledtsov, I; Kosarev, P; Vorobyev, D; Ramirez-Gonzalez, R; Leggett, R; MacLean, D; Xia, F; Luo, R; Li, Z; Xie, Y; Liu, B; Gnerre, S; MacCallum, I; Przybylski, D; Ribeiro, FJ; Sharpe, T; Hall, G; Kersey, PJ; Durbin, R; Jackman, SD; Chapman, JA; Huang, X; DeRisi, JL; Caccamo, M; Li, Y; Jaffe, DB; Green, RE; Haussler, D; Korf, I; Paten, B
2017-07-03Porcine commensal Escherichia coli: A reservoir for class 1 integrons associated with IS26Reid, C; Wyrsch, E; Chowdhury, PR; Zingali, T; Liu, M; Darling, A; Chapman, T; Djordjevic, S
2018-03-21Local and relaxed clocks, the best of both worldsFourment, M; Darling, A
2013-02-12Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequenceRands, CM; Darling, A; Fujita, M; Kong, L; Webster, MT; Clabaut, C; Emes, RD; Heger, A; Meader, S; Hawkins, MB; Eisen, MB; Teiling, C; Affourtit, J; Boese, B; Grant, PR; Grant, BR; Eisen, JA; Abzhanov, A; Ponting, CP
2016-05-13Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C)DeMaere, M; Darling, A
2013-07-15Insights into the phylogeny and coding potential of microbial dark matterRinke, C; Schwientek, P; Sczyrba, A; Ivanova, NN; Anderson, IJ; Cheng, JF; Darling, A; Malfatti, S; Swan, BK; Gies, EA; Dodsworth, JA; Hedlund, BP; Tsiamis, G; Sievert, SM; Liu, WT; Eisen, JA; Hallam, SJ; Kyrpides, NC; Stepanauskas, R; Rubin, EM; Hugenholtz, P; Woyke, T
2019-12-01Molecular techniques and their limitations shape our view of the holobiontCooke, I; Mead, O; Whalen, C; Boote, C; Moya, A; Ying, H; Robbins, S; Strugnell, JM; Darling, A; Miller, D; Voolstra, CR; Adamska, M
2019-07-15Evaluating probabilistic programming and fast variational Bayesian inference in phylogeneticsFourment, M; Darling, A
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