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Issue DateTitleAuthor(s)
2-Jun-2017Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposalsDarling, AE; Fourment, M
15-May-2017Sim3C: simulation of HiC and Meta3C proximity ligation sequencing technologiesDarling, AE; DeMaere, M
9-Jan-2017Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics softwareDarling, AE
Dec-2017Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26.Reid, CJ; Wyrsch, ER; Roy Chowdhury, P; Zingali, T; Liu, M; Darling, AE; Chapman, TA; Djordjevic, SP
27-Feb-2019Whole-genome analysis of extraintestinal Escherichia coli sequence type 73 from a single hospital over a 2 year period identified different circulating clonal groups.Bogema, DR; McKinnon, J; Liu, M; Hitchick, N; Miller, N; Venturini, C; Iredell, J; Darling, AE; Roy Chowdury, P; Djordjevic, SP
1-Oct-2011Mauve assembly metricsDarling, AE; Tritt, A; Eisen, JA; Facciotti, MT
1-Jan-2014PhyloSift: Phylogenetic analysis of genomes and metagenomesDarling, AE; Jospin, G; Lowe, E; Matsen, FA; Bik, HM; Eisen, JA
1-Jan-2015Swabs to genomes: A comprehensive workflowDunitz, MI; Lang, JM; Jospin, G; Darling, AE; Eisen, JA; Coil, DA
2006Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli.Mau, B; Glasner, JD; Darling, AE; Perna, NT
1-Jan-2009Lateral Transfer of Genes and Gene Fragments in ProkaryotesChan, CX; Beiko, RG; Darling, AE; Ragan, MA
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