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Issue Date	Title	Author(s)
2019-02-08	CAMISIM: Simulating metagenomes and microbial communities	Fritz, A; Hofmann, P; Majda, S; Dahms, E; Dröge, J; Fiedler, J; Lesker, TR; Belmann, P; Demaere, MZ; Darling, AE; Sczyrba, A; Bremges, A; McHardy, AC
2010-09-10	Metagenomic sequencing of an in vitro-simulated microbial community	Morgan, JL; Darling, AE; Eisen, JA
2010-08-12	Progressivemauve: Multiple genome alignment with gene gain, loss and rearrangement	Darling, AE; Mau, B; Perna, NT
2008-07-01	Dynamics of genome rearrangement in bacterial populations	Darling, AE; Miklós, I; Ragan, MA
2013-04-25	Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices	Lang, JM; Darling, AE; Eisen, JA
2017-01-09	Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software	Darling, AE
2016-01-01	Deconvoluting simulated metagenomes: The performance of hard- and softclustering algorithms applied to metagenomic chromosome conformation capture (3C)	DeMaere, MZ; Darling, AE
2015-01-01	Swabs to genomes: A comprehensive workflow	Dunitz, MI; Lang, JM; Jospin, G; Darling, AE; Eisen, JA; Coil, DA
-	Progressive Mauve: Multiple alignment of genomes with gene flux and rearrangement	Darling, AE; Mau, B; Perna, NT
2012-09-13	An Integrated Pipeline for de Novo Assembly of Microbial Genomes	Tritt, A; Eisen, JA; Facciotti, MT; Darling, AE

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