Issue Date | Title | Author(s) |
2019-11-01 | BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics | Ayres, DL; Cummings, MP; Baele, G; Darling, AE; Lewis, PO; Swofford, DL; Huelsenbeck, JP; Lemey, P; Rambaut, A; Suchard, MA |
2020-06-04 | Whole Genome Sequencing Analysis of Porcine Faecal Commensal Escherichia coli Carrying Class 1 Integrons from Sows and Their Offspring. | Zingali, T; Reid, CJ; Chapman, TA; Gaio, D; Liu, M; Darling, AE; Djordjevic, SP |
2006 | Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli. | Mau, B; Glasner, JD; Darling, AE; Perna, NT |
- | Protein domains as units of genetic transfer | Chan, CX; Beiko, RG; Darling, AE; Ragan, MA |
2012-06-19 | Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli | Didelot, X; Méric, G; Falush, D; Darling, AE |
2013-01-15 | MetAMOS: A modular and open source metagenomic assembly and analysis pipeline | Treangen, TJ; Koren, S; Sommer, DD; Liu, B; Astrovskaya, I; Ondov, B; Darling, AE; Phillippy, AM; Pop, M |
2014-01-01 | Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo-response | Becker, EA; Seitzer, PM; Tritt, A; Larsen, D; Krusor, M; Yao, AI; Wu, D; Madern, D; Eisen, JA; Darling, AE; Facciotti, MT |
2014-02-24 | The genome of Clostridium difficile 5.3 | Darling, AE; Worden, P; Chapman, TA; Chowdhury, PR; Charles, IG; Djordjevic, SP |
2016-01-01 | Draft genome sequences of 26 Porphyromonas strains isolated from the canine oral microbiome | Coil, DA; Alexiev, A; Wallis, C; O'Flynn, C; Deusch, O; Davis, I; Horsfall, A; Kirkwood, N; Jospin, G; Eisen, JA; Harris, S; Darling, AE |
2013-02-01 | Progressive genome-wide introgression in agricultural Campylobacter coli | Sheppard, SK; Didelot, X; Jolley, KA; Darling, AE; Pascoe, B; Meric, G; Kelly, DJ; Cody, A; Colles, FM; Strachan, NJC; Ogden, ID; Forbes, K; French, NP; Carter, P; Miller, WG; McCarthy, ND; Owen, R; Litrup, E; Egholm, M; Affourtit, JP; Bentley, SD; Parkhill, J; Maiden, MCJ; Falush, D |