| Issue Date | Title | Author(s) |
| 2-Jun-2017 | Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals | Darling, AE; Fourment, M |
| 15-May-2017 | Sim3C: simulation of HiC and Meta3C proximity ligation sequencing technologies | Darling, AE; DeMaere, M |
| 9-Jan-2017 | Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software | Darling, AE |
| Dec-2017 | Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26. | Reid, CJ; Wyrsch, ER; Roy Chowdhury, P; Zingali, T; Liu, M; Darling, AE; Chapman, TA; Djordjevic, SP |
| 31-Oct-2017 | Critical Assessment of Metagenome Interpretation - A benchmark of metagenomics software | Sczyrba, A; Hofmann, P; Belmann, P; Koslicki, D; Janssen, S; Dröge, J; Gregor, I; Majda, S; Fiedler, J; Dahms, E; Bremges, A; Fritz, A; Garrido-Oter, R; Jørgensen, TS; Shapiro, N; Blood, PD; Gurevich, A; Bai, Y; Turaev, D; Demaere, MZ; Chikhi, R; Nagarajan, N; Quince, C; Meyer, F; Balvočiutė, M; Hansen, LH; Sørensen, SJ; Chia, BKH; Denis, B; Froula, JL; Wang, Z; Egan, R; Don Kang, D; Cook, JJ; Deltel, C; Beckstette, M; Lemaitre, C; Peterlongo, P; Rizk, G; Lavenier, D; Wu, YW; Singer, SW; Jain, C; Strous, M; Klingenberg, H; Meinicke, P; Barton, MD; Lingner, T; Lin, HH; Liao, YC; Silva, GGZ; Cuevas, DA; Edwards, RA; Saha, S; Piro, VC; Renard, BY; Pop, M; Klenk, HP; Göker, M; Kyrpides, NC; Woyke, T; Vorholt, JA; Schulze-Lefert, P; Rubin, EM; Darling, AE; Rattei, T; McHardy, AC |
| 1-Jan-2017 | The rapid in vivo evolution of Pseudomonas aeruginosa in ventilator-associated pneumonia patients leads to attenuated virulence | Wang, K; Chen, YQ; Salido, MM; Kohli, GS; Kong, JL; Liang, HJ; Yao, ZT; Xie, YT; Wu, HY; Cai, SQ; Drautz-Moses, DI; Darling, AE; Schuster, SC; Yang, L; Ding, Y |
| 1-Jan-2014 | Alignathon: A competitive assessment of whole-genome alignment methods | Earl, D; Nguyen, N; Hickey, G; Harris, RS; Fitzgerald, S; Beal, K; Seledtsov, I; Molodtsov, V; Raney, BJ; Clawson, H; Kim, J; Kemena, C; Chang, JM; Erb, I; Poliakov, A; Hou, M; Herrero, J; Kent, WJ; Solovyev, V; Darling, AE; Ma, J; Notredame, C; Brudno, M; Dubchak, I; Haussler, D; Paten, B |
| 1-Jan-2020 | Whole-genome analysis of extraintestinal Escherichia coli sequence type 73 from a single hospital over a 2 year period identified different circulating clonal groups | Bogema, DR; McKinnon, J; Liu, M; Hitchick, N; Miller, N; Venturini, C; Iredell, J; Darling, AE; Chowdury, PR; Djordjevic, SP |
| 13-Feb-2019 | High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaechei | Monahan, LG; Demaere, MZ; Cummins, ML; Djordjevic, SP; Roy Chowdhury, P; Darling, AE |
| 1-Jan-2013 | Draft genome sequence of Kocuria sp. strain UCD-OTCP (phylum Actinobacteria) | Coil, DA; Doctor, JI; Lang, JM; Darling, AE; Eisen, JA |
