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Issue DateTitleAuthor(s)
2017-09-21DESMAN: A new tool for de novo extraction of strains from metagenomesQuince, C; Delmont, TO; Raguideau, S; Alneberg, J; Darling, AE; Collins, G; Eren, AM
2019-06-01Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignmentCoilID, DA; Jospin, G; Darling, AE; Wallis, C; Davis, IJ; Harris, S; Eisen, JA; Holcombe, LJ; O'Flynn, C
2014-01-01Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation productsBeitel, CW; Froenicke, L; Lang, JM; Korf, IF; Michelmore, RW; Eisen, JA; Darling, AE
2019-02-13High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaecheiMonahan, LG; Demaere, MZ; Cummins, ML; Djordjevic, SP; Roy Chowdhury, P; Darling, AE
2013-01-01Draft genome sequence of Microbacterium sp. strain UCD-TDU (phylum Actinobacteria)Bendiks, ZA; Lang, JM; Darling, AE; Eisen, JA; Coil, DA
2019-02-26Bin3C: Exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomesDemaere, MZ; Darling, AE
2021-03Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit.Meyer, F; Lesker, T-R; Koslicki, D; Fritz, A; Gurevich, A; Darling, AE; Sczyrba, A; Bremges, A; McHardy, AC
2018-05-01Online Bayesian phylogenetic inference: Theoretical foundations via sequential Monte CarloDinh, V; Darling, AE; Matsen, FA
2021-07-23Strainberry: automated strain separation in low-complexity metagenomes using long readsVicedomini, R; Quince, C; Darling, AE; Chikhi, R
2021-07-26STRONG: metagenomics strain resolution on assembly graphsQuince, C; Nurk, S; Raguideau, S; James, R; Soyer, OS; Summers, JK; Limasset, A; Eren, AM; Chikhi, R; Darling, AE
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