| Issue Date | Title | Author(s) |
| 2021-07-26 | STRONG: metagenomics strain resolution on assembly graphs | Quince, C; Nurk, S; Raguideau, S; James, R; Soyer, OS; Summers, JK; Limasset, A; Eren, AM; Chikhi, R; Darling, AE |
| 2021-07-26 | STRONG: metagenomics strain resolution on assembly graphs | Quince, C; Nurk, S; Raguideau, S; James, R; Soyer, OS; Summers, JK; Limasset, A; Eren, AM; Chikhi, R; Darling, AE |
| 2021-02-25 | Automated strain separation in low-complexity metagenomes using long reads | Vicedomini, R; Quince, C; Darling, AE; Chikhi, R |
| 2020-08-12 | Tutorial: Assessing metagenomics software with the CAMI benchmarking toolkit | Meyer, F; Lesker, T-R; Koslicki, D; Fritz, A; Gurevich, A; Darling, AE; Sczyrba, A; Bremges, A; McHardy, AC |
| 2017-06-02 | Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals | Darling, AE; Fourment, M |
| 2018-05-01 | Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals | Fourment, M; Claywell, BC; Dinh, V; McCoy, C; Matsen, FA; Darling, AE |
| 2022-06-16 | Fidelity of Hyperbolic Space for Bayesian Phylogenetic Inference | Macaulay, M; Darling, AE; Fourment, M |
| 2023-07-25 | Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics. | Brito, BP; Frost, MJ; Anantanawat, K; Jaya, F; Batterham, T; Djordjevic, SP; Chang, W-S; Holmes, EC; Darling, AE; Kirkland, PD |
| 2023-03 | Rhometa: Population recombination rate estimation from metagenomic read datasets. | Krishnan, S; DeMaere, MZ; Beck, D; Ostrowski, M; Seymour, JR; Darling, AE; Didelot, X |
| 2018-01-01 | Sim3C: Simulation of Hi-C and Meta3C proximity ligation sequencing technologies | DeMaere, MZ; Darling, AE |
