| Issue Date | Title | Author(s) |
| 2013-07-15 | Insights into the phylogeny and coding potential of microbial dark matter | Rinke, C; Schwientek, P; Sczyrba, A; Ivanova, NN; Anderson, IJ; Cheng, JF; Darling, A; Malfatti, S; Swan, BK; Gies, EA; Dodsworth, JA; Hedlund, BP; Tsiamis, G; Sievert, SM; Liu, WT; Eisen, JA; Hallam, SJ; Kyrpides, NC; Stepanauskas, R; Rubin, EM; Hugenholtz, P; Woyke, T |
| 2014-01-01 | PhyloSift: Phylogenetic analysis of genomes and metagenomes | Darling, AE; Jospin, G; Lowe, E; Matsen, FA; Bik, HM; Eisen, JA |
| 2015-01-01 | Comparative genomics of the genus porphyromonas identifies adaptations for heme synthesis within the prevalent canine oral species porphyromonas cangingivalis | O'Flynn, C; Deusch, O; Darling, AE; Eisen, JA; Wallis, C; Davis, IJ; Harris, SJ |
| 2013-01-01 | Draft genome sequence of Leucobacter sp. strain UCD-THU (phylum Actinobacteria) | Holland-Moritz, HE; Bevans, DR; Lang, JM; Darling, AE; Eisen, JA; Coil, DA |
| 2013-01-01 | Draft genome sequence of Curtobacterium flaccumfaciens strain UCD-AKU (phylum Actinobacteria) | Flanagan, JC; Lang, JM; Darling, AE; Eisen, JA; Coil, DA |
| 2011-10-01 | Mauve assembly metrics | Darling, AE; Tritt, A; Eisen, JA; Facciotti, MT |
| 2018-08-07 | Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota | Van Deynze, A; Zamora, P; Delaux, PM; Heitmann, C; Jayaraman, D; Rajasekar, S; Graham, D; Maeda, J; Gibson, D; Schwartz, KD; Berry, AM; Bhatnagar, S; Jospin, G; Darling, A; Jeannotte, R; Lopez, J; Weimer, BC; Eisen, JA; Shapiro, HY; Ané, JM; Bennett, AB |
| 2019-06-01 | Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment | CoilID, DA; Jospin, G; Darling, AE; Wallis, C; Davis, IJ; Harris, S; Eisen, JA; Holcombe, LJ; O'Flynn, C |
| 2014-01-01 | Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products | Beitel, CW; Froenicke, L; Lang, JM; Korf, IF; Michelmore, RW; Eisen, JA; Darling, AE |
| 2013-01-01 | Draft genome sequence of Microbacterium sp. strain UCD-TDU (phylum Actinobacteria) | Bendiks, ZA; Lang, JM; Darling, AE; Eisen, JA; Coil, DA |
