| Issue Date | Title | Author(s) |
| 2003-03-28 | Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis | Paulsen, IT; Banerjei, L; Hyers, GSA; Nelson, KE; Seshadri, R; Read, TD; Fouts, DE; Eisen, JA; Gill, SR; Heidelberg, JF; Tettelin, H; Dodson, RJ; Umayam, L; Brinkac, L; Beanan, M; Daugherty, S; DeBoy, RT; Durkin, S; Kolonay, J; Madupu, R; Nelson, W; Vamathevan, J; Tran, B; Upton, J; Hansen, T; Shetty, J; Khouri, H; Utterback, T; Radune, D; Ketchum, KA; Dougherty, BA; Fraser, CM |
| 2010-09-10 | Metagenomic sequencing of an in vitro-simulated microbial community | Morgan, JL; Darling, AE; Eisen, JA |
| 2013-04-25 | Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices | Lang, JM; Darling, AE; Eisen, JA |
| 2004-04-13 | Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes | Seshadri, R; Myers, GSA; Tettelin, H; Eisen, JA; Heidelberg, JF; Dodson, RJ; Davidsen, TM; DeBoy, RT; Fouts, DE; Haft, DH; Selengut, J; Ren, Q; Brinkac, LM; Madupu, R; Kolonay, J; Durkin, SA; Daugherty, SC; Shetty, J; Shvartsbeyn, A; Gebregeorgis, E; Geer, K; Tsegaye, G; Malek, J; Ayodeji, B; Shatsman, S; McLeod, MP; Šmajs, D; Howell, JK; Pal, S; Amin, A; Vashisth, P; McNeill, TZ; Xiang, Q; Sodergren, E; Baca, E; Weinstock, GM; Norris, SJ; Fraser, CM; Paulsen, IT |
| 2015-01-01 | Swabs to genomes: A comprehensive workflow | Dunitz, MI; Lang, JM; Jospin, G; Darling, AE; Eisen, JA; Coil, DA |
| 2012-09-13 | An Integrated Pipeline for de Novo Assembly of Microbial Genomes | Tritt, A; Eisen, JA; Facciotti, MT; Darling, AE |
| 2013-01-01 | Draft genome sequence of an actinobacterium, Brachybacterium muris strain UCD-AY4 | Lo, JR; Lang, JM; Darling, AE; Eisen, JA; Coil, DA |
| 2013-02-12 | Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence | Rands, CM; Darling, A; Fujita, M; Kong, L; Webster, MT; Clabaut, C; Emes, RD; Heger, A; Meader, S; Hawkins, MB; Eisen, MB; Teiling, C; Affourtit, J; Boese, B; Grant, PR; Grant, BR; Eisen, JA; Abzhanov, A; Ponting, CP |
| 2013-01-01 | Draft genome sequence of Dietzia sp. strain UCD-THP (phylum Actinobacteria) | Diep, AL; Lang, JM; Darling, AE; Eisen, JA; Coil, DA |
| 2013-01-01 | Draft genome sequence of Kocuria sp. strain UCD-OTCP (phylum Actinobacteria) | Coil, DA; Doctor, JI; Lang, JM; Darling, AE; Eisen, JA |
