| Issue Date | Title | Author(s) |
| 2018-12-01 | The Biological Object Notation (BON): A structured file format for biological data | Buchmann, JP; Fourment, M; Holmes, EC |
| 2016-11-01 | Genome-scale rates of evolutionary change in bacteria | Duchêne, S; Holt, KE; Weill, FX; Le Hello, S; Hawkey, J; Edwards, DJ; Fourment, M; Holmes, EC |
| 2016-02-17 | Seqotron: A user-friendly sequence editor for Mac OS X | Fourment, M; Holmes, EC |
| 2014-07-24 | Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data | Fourment, M; Holmes, EC |
| 2016-01-21 | Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus | Bos, KI; Herbig, A; Sahl, J; Waglechner, N; Fourment, M; Forrest, SA; Klunk, J; Schuenemann, VJ; Poinar, D; Kuch, M; Golding, GB; Dutour, O; Keim, P; Wagner, DM; Holmes, EC; Krause, J; Poinar, HN |
| 2014-01-01 | Yersinia pestis and the Plague of Justinian 541-543 AD: A genomic analysis | Wagner, DM; Klunk, J; Harbeck, M; Devault, A; Waglechner, N; Sahl, JW; Enk, J; Birdsell, DN; Kuch, M; Lumibao, C; Poinar, D; Pearson, T; Fourment, M; Golding, B; Riehm, JM; Earn, DJD; DeWitte, S; Rouillard, JM; Grupe, G; Wiechmann, I; Bliska, JB; Keim, PS; Scholz, HC; Holmes, EC; Poinar, H |
| 2022-10-26 | Diverse RNA Viruses Associated with Diatom, Eustigmatophyte, Dinoflagellate, and Rhodophyte Microalgae Cultures. | Charon, J; Kahlke, T; Larsson, ME; Abbriano, R; Commault, A; Burke, J; Ralph, P; Holmes, EC; Parrish, CR |
| 2022-10-26 | Diverse RNA Viruses Associated with Diatom, Eustigmatophyte, Dinoflagellate, and Rhodophyte Microalgae Cultures. | Charon, J; Kahlke, T; Larsson, ME; Abbriano, R; Commault, A; Burke, J; Ralph, P; Holmes, EC; Parrish, CR |
| 2023-07-25 | Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics. | Brito, BP; Frost, MJ; Anantanawat, K; Jaya, F; Batterham, T; Djordjevic, SP; Chang, W-S; Holmes, EC; Darling, AE; Kirkland, PD |
| 2018-06-02 | Virological sampling of inaccessible wildlife with drones | Geoghegan, JL; Pirotta, V; Harvey, E; Smith, A; Buchmann, JP; Ostrowski, M; Eden, JS; Harcourt, R; Holmes, EC |
