Kernel-based visualisation of genes with the gene ontology

DSpace/Manakin Repository

Search OPUS


Advanced Search

Browse

My Account

Show simple item record

dc.contributor.author Ghous, H
dc.contributor.author Kennedy, PJ
dc.contributor.author Catchpoole, DR
dc.contributor.author Simoff, SJ
dc.date.accessioned 2010-05-28T10:00:18Z
dc.date.issued 2008
dc.identifier.citation Conferences in Research and Practice in Information Technology Series, 2008, 87 pp. 133 - 140
dc.identifier.isbn 9781920682682
dc.identifier.issn 1445-1336
dc.identifier.other E1 en_US
dc.identifier.uri http://hdl.handle.net/10453/10899
dc.description.abstract With the development of microarray-based high- throughput technologies for examining genetic and biological information en masse, biologists are now faced with making sense of large lists of genes identi-ffed from their biological experiments. There is a vital need for \system biology" approaches which can allow biologists to see new or unanticipated potential relationships which will lead to new hypotheses and eventual new knowledge. Finding and understanding relationships in this data is a problem well suited to visualisation. We augment genes with their associated terms from the Gene Ontology and visualise them using kernel Principal Component Analysis with both specialised linear and Gaussian kernels. Our results show that this method can correctly visualise genes by their functional relationships and we describe the difference between using the linear and Gaussian kernels on the problem. © 2008, Australian Computer Society, Inc.
dc.title Kernel-based visualisation of genes with the gene ontology
dc.type Conference Proceeding
dc.parent Conferences in Research and Practice in Information Technology Series
dc.journal.volume 87
dc.journal.number en_US
dc.publocation Sydney en_US
dc.publocation Sydney
dc.identifier.startpage 133 en_US
dc.identifier.endpage 140 en_US
dc.cauo.name FEIT.School of Software en_US
dc.conference Verified OK en_US
dc.conference Australian Data Mining Conference
dc.for 0803 Computer Software
dc.personcode 000716
dc.personcode 990679
dc.personcode 996701
dc.personcode 10500597
dc.percentage 100 en_US
dc.classification.name Computer Software en_US
dc.classification.type FOR-08 en_US
dc.edition en_US
dc.custom Australian Data Mining Conference en_US
dc.date.activity 20081127 en_US
dc.date.activity 2008-11-27
dc.location.activity Adelaide en_US
dc.location.activity Adelaide
dc.description.keywords en_US
dc.description.keywords Biomedical datasets
dc.description.keywords Gene ontology
dc.description.keywords Kernel-based visualization
pubs.embargo.period Not known
pubs.organisational-group /University of Technology Sydney
pubs.organisational-group /University of Technology Sydney/Faculty of Engineering and Information Technology
pubs.organisational-group /University of Technology Sydney/Faculty of Engineering and Information Technology/School of Software
pubs.organisational-group /University of Technology Sydney/Strength - Quantum Computation and Intelligent Systems
pubs.organisational-group /University of Technology Sydney/Students


Files in this item

This item appears in the following Collection(s)

Show simple item record