Comparative landscape of alternative splicing in fruit plants

Sablok, G; Powell, B; Braessler, J; Yu, F; Min, XJ

Comparative landscape of alternative splicing in fruit plants

Sablok, G

Powell, B Braessler, J Yu, F Min, XJ

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Publication Type:: Journal Article
Citation:: Current Plant Biology, 2017, 9-10 pp. 29 - 36
Issue Date:: 2017-06-01

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Field	Value	Language
dc.contributor.author	Sablok, G https://orcid.org/0000-0002-4157-9405	en_US
dc.contributor.author	Powell, B	en_US
dc.contributor.author	Braessler, J	en_US
dc.contributor.author	Yu, F	en_US
dc.contributor.author	Min, XJ	en_US
dc.date.issued	2017-06-01	en_US
dc.identifier.citation	Current Plant Biology, 2017, 9-10 pp. 29 - 36	en_US
dc.identifier.uri	http://hdl.handle.net/10453/125782
dc.description.abstract	© 2017 The Authors Alternative splicing (AS) has played a major role in defining the protein diversity, which could be linked to phenotypic alternations. It is imperative to have a comparative resolution of AS to understand the pre-mRNAs splicing diversity. In the present research, we present a comparative assessment of the AS events in four different fruit plants including apple (Malus domestica), grape (Vitis vinifera), sweet orange (Citrus sinensis), and woodland strawberry (Fragaria vesca), using spliced mapping of the expressed sequence tags and mRNA sequences. We identified a total of 2039 AS events in apple, 2454 in grape, 1425 in orange, and 631 in strawberry, respectively. In this study grape displayed the maximum number of genes (1588) associated with the splicing, followed by apple (1580), orange (1133) and strawberry (444). Transcripts mapping analysis shows that grape plant has relatively larger intron sizes than introns in other fruit species. The data provide a basis for further functional characterization of the genes undergoing AS and can be accessed at Plant Alternative Splicing Database (http://proteomics.ysu.edu/altsplice/plant/).	en_US
dc.relation.ispartof	Current Plant Biology	en_US
dc.relation.isbasedon	10.1016/j.cpb.2017.06.001	en_US
dc.title	Comparative landscape of alternative splicing in fruit plants	en_US
dc.type	Journal Article
utslib.citation.volume	9-10	en_US
utslib.for	0607 Plant Biology	en_US
utslib.for	0602 Ecology	en_US
pubs.embargo.period	Not known	en_US
pubs.organisational-group	/University of Technology Sydney
pubs.organisational-group	/University of Technology Sydney/Faculty of Science
pubs.organisational-group	/University of Technology Sydney/Strength - C3 - Climate Change Cluster
utslib.copyright.status	closed_access
pubs.publication-status	Published	en_US
pubs.volume	9-10	en_US

Abstract:

© 2017 The Authors Alternative splicing (AS) has played a major role in defining the protein diversity, which could be linked to phenotypic alternations. It is imperative to have a comparative resolution of AS to understand the pre-mRNAs splicing diversity. In the present research, we present a comparative assessment of the AS events in four different fruit plants including apple (Malus domestica), grape (Vitis vinifera), sweet orange (Citrus sinensis), and woodland strawberry (Fragaria vesca), using spliced mapping of the expressed sequence tags and mRNA sequences. We identified a total of 2039 AS events in apple, 2454 in grape, 1425 in orange, and 631 in strawberry, respectively. In this study grape displayed the maximum number of genes (1588) associated with the splicing, followed by apple (1580), orange (1133) and strawberry (444). Transcripts mapping analysis shows that grape plant has relatively larger intron sizes than introns in other fruit species. The data provide a basis for further functional characterization of the genes undergoing AS and can be accessed at Plant Alternative Splicing Database (http://proteomics.ysu.edu/altsplice/plant/).

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http://hdl.handle.net/10453/125782