Data Descriptor: Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Brown, MV; Van De Kamp, J; Ostrowski, M; Seymour, JR; Ingleton, T; Messer, LF; Jeffries, T; Siboni, N; Laverock, B; Bibiloni-Isaksson, J; Nelson, TM; Coman, F; Davies, CH; Frampton, D; Rayner, M; Goossen, K; Robert, S; Holmes, B; Abell, GCJ; Craw, P; Kahlke, T; Sow, SLS; McAllister, K; Windsor, J; Skuza, M; Crossing, R; Patten, N; Malthouse, P; Van Ruth, PD; Paulsen, I; Fuhrman, JA; Richardson, A; Koval, J; Bissett, A; Fitzgerald, A; Moltmann, T; Bodrossy, L

Data Descriptor: Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Brown, MV Van De Kamp, J Ostrowski, M

Seymour, JR

Ingleton, T Messer, LF

Jeffries, T

Siboni, N

Laverock, B

Bibiloni-Isaksson, J Nelson, TM Coman, F Davies, CH Frampton, D Rayner, M Goossen, K Robert, S Holmes, B Abell, GCJ Craw, P Kahlke, T

Sow, SLS McAllister, K Windsor, J Skuza, M Crossing, R Patten, N Malthouse, P Van Ruth, PD Paulsen, I Fuhrman, JA Richardson, A Koval, J Bissett, A Fitzgerald, A Moltmann, T Bodrossy, L

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Publication Type:: Journal Article
Citation:: Scientific Data, 2018, 5
Issue Date:: 2018-07-17

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Field	Value	Language
dc.contributor.author	Brown, MV	en_US
dc.contributor.author	Van De Kamp, J	en_US
dc.contributor.author	Ostrowski, M https://orcid.org/0000-0002-4357-3023	en_US
dc.contributor.author	Seymour, JR https://orcid.org/0000-0002-3745-6541	en_US
dc.contributor.author	Ingleton, T	en_US
dc.contributor.author	Messer, LF https://orcid.org/0000-0002-8335-2807	en_US
dc.contributor.author	Jeffries, T https://orcid.org/0000-0001-6479-0353	en_US
dc.contributor.author	Siboni, N https://orcid.org/0000-0001-6082-0949	en_US
dc.contributor.author	Laverock, B https://orcid.org/0000-0002-9749-0338	en_US
dc.contributor.author	Bibiloni-Isaksson, J	en_US
dc.contributor.author	Nelson, TM	en_US
dc.contributor.author	Coman, F	en_US
dc.contributor.author	Davies, CH	en_US
dc.contributor.author	Frampton, D	en_US
dc.contributor.author	Rayner, M	en_US
dc.contributor.author	Goossen, K	en_US
dc.contributor.author	Robert, S	en_US
dc.contributor.author	Holmes, B	en_US
dc.contributor.author	Abell, GCJ	en_US
dc.contributor.author	Craw, P	en_US
dc.contributor.author	Kahlke, T https://orcid.org/0000-0002-9762-6573	en_US
dc.contributor.author	Sow, SLS	en_US
dc.contributor.author	McAllister, K	en_US
dc.contributor.author	Windsor, J	en_US
dc.contributor.author	Skuza, M	en_US
dc.contributor.author	Crossing, R	en_US
dc.contributor.author	Patten, N	en_US
dc.contributor.author	Malthouse, P	en_US
dc.contributor.author	Van Ruth, PD	en_US
dc.contributor.author	Paulsen, I	en_US
dc.contributor.author	Fuhrman, JA	en_US
dc.contributor.author	Richardson, A	en_US
dc.contributor.author	Koval, J	en_US
dc.contributor.author	Bissett, A	en_US
dc.contributor.author	Fitzgerald, A	en_US
dc.contributor.author	Moltmann, T	en_US
dc.contributor.author	Bodrossy, L	en_US
dc.date.available	2018-04-26	en_US
dc.date.issued	2018-07-17	en_US
dc.identifier.citation	Scientific Data, 2018, 5	en_US
dc.identifier.uri	http://hdl.handle.net/10453/128495
dc.description.abstract	© 2018 Author(s). Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.	en_US
dc.relation.ispartof	Scientific Data	en_US
dc.relation.isbasedon	10.1038/sdata.2018.130	en_US
dc.subject.mesh	Bacteria	en_US
dc.subject.mesh	Archaea	en_US
dc.subject.mesh	Sequence Analysis, RNA	en_US
dc.subject.mesh	Water Microbiology	en_US
dc.subject.mesh	Biodiversity	en_US
dc.subject.mesh	Australia	en_US
dc.subject.mesh	Oceans and Seas	en_US
dc.subject.mesh	Microbiota	en_US
dc.title	Data Descriptor: Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative	en_US
dc.type	Journal Article
utslib.citation.volume	5	en_US
utslib.for	0602 Ecology	en_US
pubs.embargo.period	Not known	en_US
pubs.organisational-group	/University of Technology Sydney
pubs.organisational-group	/University of Technology Sydney/Faculty of Science
pubs.organisational-group	/University of Technology Sydney/Strength - C3 - Climate Change Cluster
pubs.organisational-group	/University of Technology Sydney/Students
utslib.copyright.status	open_access
pubs.publication-status	Published	en_US
pubs.volume	5	en_US

Abstract:

© 2018 Author(s). Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.

Please use this identifier to cite or link to this item:

http://hdl.handle.net/10453/128495