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Issue Date
Title
Author(s)
2020-03-01
19 Dubious Ways to Compute the Marginal Likelihood of a Phylogenetic Tree Topology.
Fourment, M
;
Magee, AF
;
Whidden, C
;
Bilge, A
;
Matsen, FA
;
Minin, VN
2014-01-01
PhyloSift: Phylogenetic analysis of genomes and metagenomes
Darling, AE
;
Jospin, G
;
Lowe, E
;
Matsen, FA
;
Bik, HM
;
Eisen, JA
2018-05-01
Online Bayesian phylogenetic inference: Theoretical foundations via sequential Monte Carlo
Dinh, V
;
Darling, AE
;
Matsen, FA
2018-01-01
A Surrogate Function for One-Dimensional Phylogenetic Likelihoods
Claywell, BC
;
Dinh, V
;
Fourment, M
;
McCoy, CO
;
Matsen, FA
2018-05-01
Effective online Bayesian phylogenetics via sequential Monte Carlo with guided proposals
Fourment, M
;
Claywell, BC
;
Dinh, V
;
McCoy, C
;
Matsen, FA
;
Darling, AE
2016-10-25
Online Bayesian phylogenetic inference: theoretical foundations via Sequential Monte Carlo
Dinh, V
;
Darling, AE
;
Matsen, FA
2020-03-01
Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies.
Whidden, C
;
Claywell, BC
;
Fisher, T
;
Magee, AF
;
Fourment, M
;
Matsen, FA
2023-07-31
A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm.
Jun, S-H
;
Nasif, H
;
Jennings-Shaffer, C
;
Rich, DH
;
Kooperberg, A
;
Fourment, M
;
Zhang, C
;
Suchard, MA
;
Matsen, FA
2024-02-01
Many-core algorithms for high-dimensional gradients on phylogenetic trees.
Gangavarapu, K
;
Ji, X
;
Baele, G
;
Fourment, M
;
Lemey, P
;
Matsen, FA
;
Suchard, MA
;
Ponty, Y
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Evolutionary Biology
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