| Issue Date | Title | Author(s) |
| 2019-01-01 | BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis | Bouckaert, R; Vaughan, TG; Barido-Sottani, J; Duchêne, S; Fourment, M; Gavryushkina, A; Heled, J; Jones, G; Kühnert, D; De Maio, N; Matschiner, M; Mendes, FK; Müller, NF; Ogilvie, HA; Du Plessis, L; Popinga, A; Rambaut, A; Rasmussen, D; Siveroni, I; Suchard, MA; Wu, CH; Xie, D; Zhang, C; Stadler, T; Drummond, AJ |
| 2012-01-01 | BEAGLE: An application programming interface and high-performance computing library for statistical phylogenetics | Ayres, DL; Darling, A; Zwickl, DJ; Beerli, P; Holder, MT; Lewis, PO; Huelsenbeck, JP; Ronquist, F; Swofford, DL; Cummings, MP; Rambaut, A; Suchard, MA |
| 2022-11-04 | Automatic differentiation is no panacea for phylogenetic gradient computation | Fourment, M; Swanepoel, CJ; Galloway, JG; Ji, X; Gangavarapu, K; Suchard, MA; IV, FAM |
| 2012-05-01 | Mrbayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space | Ronquist, F; Teslenko, M; Van Der Mark, P; Ayres, DL; Darling, A; Höhna, S; Larget, B; Liu, L; Suchard, MA; Huelsenbeck, JP |
| 2022-11-10 | TreeFlow: probabilistic programming and automatic differentiation for phylogenetics | Swanepoel, C; Fourment, M; Ji, X; Nasif, H; Suchard, MA; IV, FAM; Drummond, A |
| 2019-11-01 | BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics | Ayres, DL; Cummings, MP; Baele, G; Darling, AE; Lewis, PO; Swofford, DL; Huelsenbeck, JP; Lemey, P; Rambaut, A; Suchard, MA |
| 2023-07-31 | A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm. | Jun, S-H; Nasif, H; Jennings-Shaffer, C; Rich, DH; Kooperberg, A; Fourment, M; Zhang, C; Suchard, MA; Matsen, FA |
| 2023 | Data Integration in Bayesian Phylogenetics | Hassler, GW; Magee, AF; Zhang, Z; Lemey, P; Baele, G; Ji, X; Fourment, M; Suchard, MA |
| 2023-06-01 | Automatic Differentiation is no Panacea for Phylogenetic Gradient Computation. | Fourment, M; Swanepoel, CJ; Galloway, JG; Ji, X; Gangavarapu, K; Suchard, MA; Matsen Iv, FA; Williams, T |
