Browsing byAuthorEisen, JA

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Issue DateTitleAuthor(s)
2015-01-01Comparative genomics of the genus porphyromonas identifies adaptations for heme synthesis within the prevalent canine oral species porphyromonas cangingivalisO'Flynn, C; Deusch, O; Darling, AE; Eisen, JA; Wallis, C; Davis, IJ; Harris, SJ
2004-04-13Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomesSeshadri, R; Myers, GSA; Tettelin, H; Eisen, JA; Heidelberg, JF; Dodson, RJ; Davidsen, TM; DeBoy, RT; Fouts, DE; Haft, DH; Selengut, J; Ren, Q; Brinkac, LM; Madupu, R; Kolonay, J; Durkin, SA; Daugherty, SC; Shetty, J; Shvartsbeyn, A; Gebregeorgis, E; Geer, K; Tsegaye, G; Malek, J; Ayodeji, B; Shatsman, S; McLeod, MP; Šmajs, D; Howell, JK; Pal, S; Amin, A; Vashisth, P; McNeill, TZ; Xiang, Q; Sodergren, E; Baca, E; Weinstock, GM; Norris, SJ; Fraser, CM; Paulsen, IT
2013-01-01Draft genome sequence of an actinobacterium, Brachybacterium muris strain UCD-AY4Lo, JR; Lang, JM; Darling, AE; Eisen, JA; Coil, DA
2013-01-01Draft genome sequence of Curtobacterium flaccumfaciens strain UCD-AKU (phylum Actinobacteria)Flanagan, JC; Lang, JM; Darling, AE; Eisen, JA; Coil, DA
2013-01-01Draft genome sequence of Dietzia sp. strain UCD-THP (phylum Actinobacteria)Diep, AL; Lang, JM; Darling, AE; Eisen, JA; Coil, DA
2013-01-01Draft genome sequence of Kocuria sp. strain UCD-OTCP (phylum Actinobacteria)Coil, DA; Doctor, JI; Lang, JM; Darling, AE; Eisen, JA
2013-01-01Draft genome sequence of Leucobacter sp. strain UCD-THU (phylum Actinobacteria)Holland-Moritz, HE; Bevans, DR; Lang, JM; Darling, AE; Eisen, JA; Coil, DA
2013-01-01Draft genome sequence of Microbacterium sp. strain UCD-TDU (phylum Actinobacteria)Bendiks, ZA; Lang, JM; Darling, AE; Eisen, JA; Coil, DA
2016-01-01Draft genome sequences of 26 Porphyromonas strains isolated from the canine oral microbiomeCoil, DA; Alexiev, A; Wallis, C; O'Flynn, C; Deusch, O; Davis, I; Horsfall, A; Kirkwood, N; Jospin, G; Eisen, JA; Harris, S; Darling, AE
2019-06-01Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignmentCoilID, DA; Jospin, G; Darling, AE; Wallis, C; Davis, IJ; Harris, S; Eisen, JA; Holcombe, LJ; O'Flynn, C
2013-02-12Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequenceRands, CM; Darling, A; Fujita, M; Kong, L; Webster, MT; Clabaut, C; Emes, RD; Heger, A; Meader, S; Hawkins, MB; Eisen, MB; Teiling, C; Affourtit, J; Boese, B; Grant, PR; Grant, BR; Eisen, JA; Abzhanov, A; Ponting, CP
2013-07-15Insights into the phylogeny and coding potential of microbial dark matterRinke, C; Schwientek, P; Sczyrba, A; Ivanova, NN; Anderson, IJ; Cheng, JF; Darling, A; Malfatti, S; Swan, BK; Gies, EA; Dodsworth, JA; Hedlund, BP; Tsiamis, G; Sievert, SM; Liu, WT; Eisen, JA; Hallam, SJ; Kyrpides, NC; Stepanauskas, R; Rubin, EM; Hugenholtz, P; Woyke, T
2012-09-13An Integrated Pipeline for de Novo Assembly of Microbial GenomesTritt, A; Eisen, JA; Facciotti, MT; Darling, AE
2011-10-01Mauve assembly metricsDarling, AE; Tritt, A; Eisen, JA; Facciotti, MT
2010-09-10Metagenomic sequencing of an in vitro-simulated microbial communityMorgan, JL; Darling, AE; Eisen, JA
2017-01-01Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edgeEttinger, CL; Voerman, SE; Lang, JM; Stachowicz, JJ; Eisen, JA
2018-08-07Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiotaVan Deynze, A; Zamora, P; Delaux, PM; Heitmann, C; Jayaraman, D; Rajasekar, S; Graham, D; Maeda, J; Gibson, D; Schwartz, KD; Berry, AM; Bhatnagar, S; Jospin, G; Darling, A; Jeannotte, R; Lopez, J; Weimer, BC; Eisen, JA; Shapiro, HY; Ané, JM; Bennett, AB
2014-01-01Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo-responseBecker, EA; Seitzer, PM; Tritt, A; Larsen, D; Krusor, M; Yao, AI; Wu, D; Madern, D; Eisen, JA; Darling, AE; Facciotti, MT
2013-04-25Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and SupermatricesLang, JM; Darling, AE; Eisen, JA
2014-01-01PhyloSift: Phylogenetic analysis of genomes and metagenomesDarling, AE; Jospin, G; Lowe, E; Matsen, FA; Bik, HM; Eisen, JA