| Issue Date | Title | Author(s) |
| 2021-06-03 | A large-scale metagenomic survey dataset of the post-weaning piglet gut lumen | Gaio, D; DeMaere, MZ; Anantanawat, K; Eamens, GJ; Liu, M; Zingali, T; Falconer, L; Chapman, TA; Djordjevic, SP; Darling, AE |
| 2024-01-01 | Assessing how metal reef restoration structures shape the functional and taxonomic profile of coral-associated bacterial communities | Strudwick, P; Suggett, DJ; Seymour, JR; DeMaere, MZ; Grima, A; Edmondson, J; McArdle, A; Nicholson, F; Camp, EF |
| 2018-04-13 | CAMISIM: Simulating metagenomes and microbial communities | Darling, AE; Fritz, A; Hofmann, P; Majda, S; Dahms, E; Droge, J; Fiedler, J; Lesker, TR; Belmann, P; DeMaere, MZ; Sczyrba, A; Bremges, A; McHardy, AC |
| 2019-03-26 | Complete Sequences of Multiple-Drug Resistant IncHI2 ST3 Plasmids in Escherichia coli of Porcine Origin in Australia | Wyrsch, ER; Reid, CJ; DeMaere, MZ; Liu, MY; Chapman, TA; Roy Chowdhury, P; Djordjevic, SP |
| 2016-01-01 | Deconvoluting simulated metagenomes: The performance of hard- and softclustering algorithms applied to metagenomic chromosome conformation capture (3C) | DeMaere, MZ; Darling, AE |
| 2017-01-01 | Evaluation of ddRADseq for reduced representation metagenome sequencing | Liu, MY; Worden, P; Monahan, LG; DeMaere, MZ; Burke, CM; Djordjevic, SP; Charles, IG; Darling, AE |
| 2018-06-20 | Genomic variation and biogeography of Antarctic haloarchaea | Tschitschko, B; Erdmann, S; DeMaere, MZ; Roux, S; Panwar, P; Allen, MA; Williams, TJ; Brazendale, S; Hancock, AM; Eloe-Fadrosh, EA; Cavicchioli, R |
| 2019-03-01 | Identification of a novel lineage of plasmids within phylogenetically diverse subclades of IncHI2-ST1 plasmids | Roy Chowdhury, P; Fourment, M; DeMaere, MZ; Monahan, L; Merlino, J; Gottlieb, T; Darling, AE; Djordjevic, SP |
| 2020-02-06 | Metagenomic Hi-C of a Healthy Human Fecal Microbiome Transplant Donor. | DeMaere, MZ; Liu, MYZ; Lin, E; Djordjevic, SP; Charles, IG; Worden, P; Burke, CM; Monahan, LG; Gardiner, M; Borody, TJ; Darling, AE |
| 2022 | Phylogenetic diversity analysis of shotgun metagenomic reads describes gut microbiome development and treatment effects in the post-weaned pig. | Gaio, D; DeMaere, MZ; Anantanawat, K; Eamens, GJ; Falconer, L; Chapman, TA; Djordjevic, S; Darling, AE |
| 2021-08-09 | Post-weaning shifts in microbiome composition and metabolism revealed by over 25 000 pig gut metagenome-assembled genomes. | Gaio, D; DeMaere, MZ; Anantanawat, K; Chapman, TA; Djordjevic, SP; Darling, AE |
| 2021-10 | qc3C: Reference-free quality control for Hi-C sequencing data. | DeMaere, MZ; Darling, AE |
| 2023-03 | Rhometa: Population recombination rate estimation from metagenomic read datasets. | Krishnan, S; DeMaere, MZ; Beck, D; Ostrowski, M; Seymour, JR; Darling, AE; Didelot, X |
| 2018-01-01 | Sim3C: Simulation of Hi-C and Meta3C proximity ligation sequencing technologies | DeMaere, MZ; Darling, AE |
| 2011-09-01 | Simple high-throughput annotation pipeline (SHAP) | DeMaere, MZ; Lauro, FM; Thomas, T; Yau, S; Cavicchioli, R |
| 2011-04-12 | Virophage control of antarctic algal host-virus dynamics | Yau, S; Lauro, FM; DeMaere, MZ; Brown, MV; Thomas, T; Raftery, MJ; Andrews-Pfannkoch, C; Lewis, M; Hoffman, JM; Gibson, JA; Cavicchioli, R |
