Simple high-throughput annotation pipeline (SHAP)

DeMaere, MZ; Lauro, FM; Thomas, T; Yau, S; Cavicchioli, R

Simple high-throughput annotation pipeline (SHAP)

DeMaere, MZ

Lauro, FM Thomas, T Yau, S Cavicchioli, R

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Publication Type:: Journal Article
Citation:: Bioinformatics, 2011, 27 (17), pp. 2431 - 2432
Issue Date:: 2011-09-01

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Field	Value	Language
dc.contributor.author	DeMaere, MZ https://orcid.org/0000-0002-7601-5108	en_US
dc.contributor.author	Lauro, FM	en_US
dc.contributor.author	Thomas, T	en_US
dc.contributor.author	Yau, S	en_US
dc.contributor.author	Cavicchioli, R	en_US
dc.date.issued	2011-09-01	en_US
dc.identifier.citation	Bioinformatics, 2011, 27 (17), pp. 2431 - 2432	en_US
dc.identifier.issn	1367-4803	en_US
dc.identifier.uri	http://hdl.handle.net/10453/117795
dc.description.abstract	SHAP (simple high-throughput annotation pipeline) is a lightweight and scalable sequence annotation pipeline capable of supporting research efforts that generate or utilize large volumes of DNA sequence data. The software provides Grid capable analysis, relational storage and Web-based full-text searching of annotation results. Implemented in Java, SHAP recognizes the limited resources of many smaller research groups. © The Author 2011. Published by Oxford University Press. All rights reserved.	en_US
dc.relation.ispartof	Bioinformatics	en_US
dc.relation.isbasedon	10.1093/bioinformatics/btr411	en_US
dc.subject.classification	Bioinformatics	en_US
dc.subject.mesh	Humans	en_US
dc.subject.mesh	Sequence Analysis, DNA	en_US
dc.subject.mesh	Internet	en_US
dc.subject.mesh	Software	en_US
dc.subject.mesh	Information Storage and Retrieval	en_US
dc.subject.mesh	Molecular Sequence Annotation	en_US
dc.title	Simple high-throughput annotation pipeline (SHAP)	en_US
dc.type	Journal Article
utslib.citation.volume	17	en_US
utslib.citation.volume	27	en_US
utslib.for	0604 Genetics	en_US
utslib.for	01 Mathematical Sciences	en_US
utslib.for	06 Biological Sciences	en_US
utslib.for	08 Information and Computing Sciences	en_US
pubs.embargo.period	Not known	en_US
pubs.organisational-group	/University of Technology Sydney
pubs.organisational-group	/University of Technology Sydney/Faculty of Science
pubs.organisational-group	/University of Technology Sydney/Strength - ithree - Institute of Infection, Immunity and Innovation
utslib.copyright.status	closed_access
pubs.issue	17	en_US
pubs.publication-status	Published	en_US
pubs.volume	27	en_US

Abstract:

SHAP (simple high-throughput annotation pipeline) is a lightweight and scalable sequence annotation pipeline capable of supporting research efforts that generate or utilize large volumes of DNA sequence data. The software provides Grid capable analysis, relational storage and Web-based full-text searching of annotation results. Implemented in Java, SHAP recognizes the limited resources of many smaller research groups. © The Author 2011. Published by Oxford University Press. All rights reserved.

Please use this identifier to cite or link to this item:

http://hdl.handle.net/10453/117795