A synthesis of bacterial and archaeal phenotypic trait data.
Madin, JS
Nielsen, DA
Brbic, M
Corkrey, R
Danko, D
Edwards, K
Engqvist, MKM
Fierer, N
Geoghegan, JL
Gillings, M
Kyrpides, NC
Litchman, E
Mason, CE
Moore, L
Nielsen, SL
Paulsen, IT
Price, ND
Reddy, TBK
Richards, MA
Rocha, EPC
Schmidt, TM
Shaaban, H
Shukla, M
Supek, F
Tetu, SG
Vieira-Silva, S
Wattam, AR
Westfall, DA
Westoby, M
- Publisher:
- NATURE PUBLISHING GROUP
- Publication Type:
- Journal Article
- Citation:
- Scientific data, 2020, 7, (1)
- Issue Date:
- 2020-06-05
Open Access
Copyright Clearance Process
- Recently Added
- In Progress
- Open Access
This item is open access.
Full metadata record
| Field | Value | Language |
|---|---|---|
| dc.contributor.author | Madin, JS | |
| dc.contributor.author | Nielsen, DA | |
| dc.contributor.author | Brbic, M | |
| dc.contributor.author | Corkrey, R | |
| dc.contributor.author | Danko, D | |
| dc.contributor.author | Edwards, K | |
| dc.contributor.author | Engqvist, MKM | |
| dc.contributor.author | Fierer, N | |
| dc.contributor.author | Geoghegan, JL | |
| dc.contributor.author | Gillings, M | |
| dc.contributor.author | Kyrpides, NC | |
| dc.contributor.author | Litchman, E | |
| dc.contributor.author | Mason, CE | |
| dc.contributor.author | Moore, L | |
| dc.contributor.author | Nielsen, SL | |
| dc.contributor.author | Paulsen, IT | |
| dc.contributor.author | Price, ND | |
| dc.contributor.author | Reddy, TBK | |
| dc.contributor.author | Richards, MA | |
| dc.contributor.author | Rocha, EPC | |
| dc.contributor.author | Schmidt, TM | |
| dc.contributor.author | Shaaban, H | |
| dc.contributor.author | Shukla, M | |
| dc.contributor.author | Supek, F | |
| dc.contributor.author | Tetu, SG | |
| dc.contributor.author | Vieira-Silva, S | |
| dc.contributor.author | Wattam, AR | |
| dc.contributor.author | Westfall, DA | |
| dc.contributor.author | Westoby, M | |
| dc.date.accessioned | 2020-10-22T02:52:04Z | |
| dc.date.available | 2020-04-20 | |
| dc.date.available | 2020-10-22T02:52:04Z | |
| dc.date.issued | 2020-06-05 | |
| dc.identifier.citation | Scientific data, 2020, 7, (1) | |
| dc.identifier.issn | 2052-4463 | |
| dc.identifier.issn | 2052-4463 | |
| dc.identifier.uri | http://hdl.handle.net/10453/143459 | |
| dc.description.abstract | A synthesis of phenotypic and quantitative genomic traits is provided for bacteria and archaea, in the form of a scripted, reproducible workflow that standardizes and merges 26 sources. The resulting unified dataset covers 14 phenotypic traits, 5 quantitative genomic traits, and 4 environmental characteristics for approximately 170,000 strain-level and 15,000 species-aggregated records. It spans all habitats including soils, marine and fresh waters and sediments, host-associated and thermal. Trait data can find use in clarifying major dimensions of ecological strategy variation across species. They can also be used in conjunction with species and abundance sampling to characterize trait mixtures in communities and responses of traits along environmental gradients. | |
| dc.format | Electronic | |
| dc.language | eng | |
| dc.publisher | NATURE PUBLISHING GROUP | |
| dc.relation.ispartof | Scientific data | |
| dc.relation.isbasedon | 10.1038/s41597-020-0497-4 | |
| dc.rights | info:eu-repo/semantics/openAccess | |
| dc.title | A synthesis of bacterial and archaeal phenotypic trait data. | |
| dc.type | Journal Article | |
| utslib.citation.volume | 7 | |
| utslib.location.activity | England | |
| pubs.organisational-group | /University of Technology Sydney/Faculty of Science | |
| pubs.organisational-group | /University of Technology Sydney/Faculty of Science/School of Life Sciences | |
| pubs.organisational-group | /University of Technology Sydney | |
| utslib.copyright.status | open_access | * |
| pubs.consider-herdc | false | |
| dc.date.updated | 2020-10-22T02:51:40Z | |
| pubs.issue | 1 | |
| pubs.publication-status | Published | |
| pubs.volume | 7 | |
| utslib.citation.issue | 1 |
Abstract:
A synthesis of phenotypic and quantitative genomic traits is provided for bacteria and archaea, in the form of a scripted, reproducible workflow that standardizes and merges 26 sources. The resulting unified dataset covers 14 phenotypic traits, 5 quantitative genomic traits, and 4 environmental characteristics for approximately 170,000 strain-level and 15,000 species-aggregated records. It spans all habitats including soils, marine and fresh waters and sediments, host-associated and thermal. Trait data can find use in clarifying major dimensions of ecological strategy variation across species. They can also be used in conjunction with species and abundance sampling to characterize trait mixtures in communities and responses of traits along environmental gradients.
Please use this identifier to cite or link to this item:
Download statistics for the last 12 months
Not enough data to produce graph