MetAMOS: A modular and open source metagenomic assembly and analysis pipeline

Treangen, TJ; Koren, S; Sommer, DD; Liu, B; Astrovskaya, I; Ondov, B; Darling, AE; Phillippy, AM; Pop, M

MetAMOS: A modular and open source metagenomic assembly and analysis pipeline

Treangen, TJ Koren, S Sommer, DD Liu, B Astrovskaya, I Ondov, B Darling, AE

Phillippy, AM Pop, M

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Publication Type:: Journal Article
Citation:: Genome Biology, 2013, 14 (1)
Issue Date:: 2013-01-15

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Field	Value	Language
dc.contributor.author	Treangen, TJ	en_US
dc.contributor.author	Koren, S	en_US
dc.contributor.author	Sommer, DD	en_US
dc.contributor.author	Liu, B	en_US
dc.contributor.author	Astrovskaya, I	en_US
dc.contributor.author	Ondov, B	en_US
dc.contributor.author	Darling, AE https://orcid.org/0000-0003-2397-7925	en_US
dc.contributor.author	Phillippy, AM	en_US
dc.contributor.author	Pop, M	en_US
dc.date.available	2013-01-15	en_US
dc.date.issued	2013-01-15	en_US
dc.identifier.citation	Genome Biology, 2013, 14 (1)	en_US
dc.identifier.issn	1474-7596	en_US
dc.identifier.uri	http://hdl.handle.net/10453/23571
dc.description.abstract	© 2013 Treangen et al. We describe MetAMOS, an open source and modular metagenomic assembly and analysis pipeline. MetAMOS represents an important step towards fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations. MetAMOS can aid in reducing assembly errors, commonly encountered when assembling metagenomic samples, and improves taxonomic assignment accuracy while also reducing computational cost. MetAMOS can be downloaded from: https://github.com/treangen/MetAMOS.	en_US
dc.relation.ispartof	Genome Biology	en_US
dc.relation.isbasedon	10.1186/gb-2013-14-1-r2	en_US
dc.subject.classification	Bioinformatics	en_US
dc.subject.mesh	Contig Mapping	en_US
dc.subject.mesh	Sequence Analysis, DNA	en_US
dc.subject.mesh	Software	en_US
dc.subject.mesh	Metagenomics	en_US
dc.title	MetAMOS: A modular and open source metagenomic assembly and analysis pipeline	en_US
dc.type	Journal Article
utslib.citation.volume	1	en_US
utslib.citation.volume	14	en_US
utslib.for	0604 Genetics	en_US
utslib.for	05 Environmental Sciences	en_US
utslib.for	06 Biological Sciences	en_US
utslib.for	08 Information and Computing Sciences	en_US
pubs.embargo.period	Not known	en_US
pubs.organisational-group	/University of Technology Sydney
pubs.organisational-group	/University of Technology Sydney/Faculty of Science
pubs.organisational-group	/University of Technology Sydney/Strength - ithree - Institute of Infection, Immunity and Innovation
utslib.copyright.status	open_access
pubs.issue	1	en_US
pubs.publication-status	Published	en_US
pubs.volume	14	en_US

Abstract:

© 2013 Treangen et al. We describe MetAMOS, an open source and modular metagenomic assembly and analysis pipeline. MetAMOS represents an important step towards fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations. MetAMOS can aid in reducing assembly errors, commonly encountered when assembling metagenomic samples, and improves taxonomic assignment accuracy while also reducing computational cost. MetAMOS can be downloaded from: https://github.com/treangen/MetAMOS.

Please use this identifier to cite or link to this item:

http://hdl.handle.net/10453/23571