MetAMOS: A modular and open source metagenomic assembly and analysis pipeline

Publication Type:
Journal Article
Citation:
Genome Biology, 2013, 14 (1)
Issue Date:
2013-01-15
Metrics:
Full metadata record
Files in This Item:
Filename Description Size
Thumbnail2012004806OK.pdf1.42 MB
Adobe PDF
© 2013 Treangen et al. We describe MetAMOS, an open source and modular metagenomic assembly and analysis pipeline. MetAMOS represents an important step towards fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations. MetAMOS can aid in reducing assembly errors, commonly encountered when assembling metagenomic samples, and improves taxonomic assignment accuracy while also reducing computational cost. MetAMOS can be downloaded from: https://github.com/treangen/MetAMOS.
Please use this identifier to cite or link to this item: