Circleator: Flexible circular visualization of genome-associated data with BioPerl and SVG

Publication Type:
Journal Article
Citation:
Bioinformatics, 2014, 30 (21), pp. 3125 - 3127
Issue Date:
2014-01-01
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© The Author 2014. Published by Oxford University Press. Circleator is a Perl application that generates circular figures of genome-associated data. It leverages BioPerl to support standard annotation and sequence file formats and produces publication-quality SVG output. It is designed to be both flexible and easy to use. It includes a library of circular track types and predefined configuration files for common use-cases, including. (i) visualizing gene annotation and DNA sequence data from a GenBank flat file, (ii) displaying patterns of gene conservation in related microbial strains, (iii) showing Single Nucleotide Polymorphisms (SNPs) and indels relative to a reference genome and gene set and (iv) viewing RNA-Seq plots.
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