| Issue Date | Title | Author(s) |
| 2012-09-13 | An Integrated Pipeline for de Novo Assembly of Microbial Genomes | Tritt, A; Eisen, JA; Facciotti, MT; Darling, AE |
| 2013-04-01 | Chloromitossrdb: Open source repository of perfect and imperfect repeats in organelle genomes for evolutionary genomics | Sablok, G; Mudunuri, SB; Patnana, S; Popova, M; Fares, MA; La Porta, N |
| 2000-01-01 | Fitting nonlinear and constrained generalized estimating equations with optimization software | Contreras, M; Ryan, LM |
| 2011-06-30 | Rosettascripts: A scripting language interface to the Rosetta Macromolecular modeling suite | Fleishman, SJ; Leaver-Fay, A; Corn, JE; Strauch, EM; Khare, SD; Koga, N; Ashworth, J; Murphy, P; Richter, F; Lemmon, G; Meiler, J; Baker, D |
| 2004-07-01 | Mauve: Multiple alignment of conserved genomic sequence with rearrangements | Darling, ACE; Mau, B; Blattner, FR; Perna, NT |
| 2009-08-01 | Reordering contigs of draft genomes using the Mauve Aligner | Rissman, AI; Mau, B; Biehl, BS; Darling, AE; Glasner, JD; Perna, NT |
| 1986-07-11 | Isolation and computer-aided characterization of MmeI, a type II restriction endonuclease from Methylophilus methylotrophus. | Boyd, AC; Charles, IG; Keyte, JW; Brammar, WJ |
| 2018-01-01 | Visualization of phage genomic data: Comparative genomics and publication-quality diagrams | Turner, D; Sutton, JM; Reynolds, DM; Sim, EM; Petty, NK |
| 2009-04-01 | A novel heuristic for local multiple alignment of interspersed DNA repeats | Treangen, TJ; Darling, AE; Achaz, G; Ragan, MA; Messeguer, X; Rocha, EPC |
| 2019-01-01 | BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis | Bouckaert, R; Vaughan, TG; Barido-Sottani, J; Duchêne, S; Fourment, M; Gavryushkina, A; Heled, J; Jones, G; Kühnert, D; De Maio, N; Matschiner, M; Mendes, FK; Müller, NF; Ogilvie, HA; Du Plessis, L; Popinga, A; Rambaut, A; Rasmussen, D; Siveroni, I; Suchard, MA; Wu, CH; Xie, D; Zhang, C; Stadler, T; Drummond, AJ |
