| Issue Date | Title | Author(s) |
| 2018-12-01 | The Biological Object Notation (BON): A structured file format for biological data | Buchmann, JP; Fourment, M; Holmes, EC |
| 2016-11-01 | Genome-scale rates of evolutionary change in bacteria | Duchêne, S; Holt, KE; Weill, FX; Le Hello, S; Hawkey, J; Edwards, DJ; Fourment, M; Holmes, EC |
| 2016-02-17 | Seqotron: A user-friendly sequence editor for Mac OS X | Fourment, M; Holmes, EC |
| 2014-07-24 | Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data | Fourment, M; Holmes, EC |
| 2016-01-21 | Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus | Bos, KI; Herbig, A; Sahl, J; Waglechner, N; Fourment, M; Forrest, SA; Klunk, J; Schuenemann, VJ; Poinar, D; Kuch, M; Golding, GB; Dutour, O; Keim, P; Wagner, DM; Holmes, EC; Krause, J; Poinar, HN |
| 2018-10-04 | An Atypical Parvovirus Drives Chronic Tubulointerstitial Nephropathy and Kidney Fibrosis | Roediger, B; Lee, Q; Tikoo, S; Cobbin, JCA; Henderson, JM; Jormakka, M; O'Rourke, MB; Padula, MP; Pinello, N; Henry, M; Wynne, M; Santagostino, SF; Brayton, CF; Rasmussen, L; Lisowski, L; Tay, SS; Harris, DC; Bertram, JF; Dowling, JP; Bertolino, P; Lai, JH; Wu, W; Bachovchin, WW; Wong, JJL; Gorrell, MD; Shaban, B; Holmes, EC; Jolly, CJ; Monette, S; Weninger, W |
| 2014-01-01 | Yersinia pestis and the Plague of Justinian 541-543 AD: A genomic analysis | Wagner, DM; Klunk, J; Harbeck, M; Devault, A; Waglechner, N; Sahl, JW; Enk, J; Birdsell, DN; Kuch, M; Lumibao, C; Poinar, D; Pearson, T; Fourment, M; Golding, B; Riehm, JM; Earn, DJD; DeWitte, S; Rouillard, JM; Grupe, G; Wiechmann, I; Bliska, JB; Keim, PS; Scholz, HC; Holmes, EC; Poinar, H |
| 2021-09-14 | Revealing RNA virus diversity and evolution in unicellular algae transcriptomes | Charon, J; Murray, S; Holmes, EC |
| 2022-10-26 | Diverse RNA Viruses Associated with Diatom, Eustigmatophyte, Dinoflagellate, and Rhodophyte Microalgae Cultures. | Charon, J; Kahlke, T; Larsson, ME; Abbriano, R; Commault, A; Burke, J; Ralph, P; Holmes, EC; Parrish, CR |
| 2022-05 | Australia as a global sink for the genetic diversity of avian influenza A virus. | Wille, M; Grillo, V; Ban de Gouvea Pedroso, S; Burgess, GW; Crawley, A; Dickason, C; Hansbro, PM; Hoque, MA; Horwood, PF; Kirkland, PD; Kung, NY-H; Lynch, SE; Martin, S; McArthur, M; O'Riley, K; Read, AJ; Warner, S; Hoye, BJ; Lisovski, S; Leen, T; Hurt, AC; Butler, J; Broz, I; Davies, KR; Mileto, P; Neave, MJ; Stevens, V; Breed, AC; Lam, TTY; Holmes, EC; Klaassen, M; Wong, FYK; Stern, A |
